RchiOBHm_Chr6g0270291

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0029733
Physical Location & Seq
Reverse (-)
28145901 .. 28146655
755 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24248

Sequence Viewer

Length: 318 bp
ATGTCTAAAGCACCAGCTCAAGAAGAAGCAGTGCATGCTTATGGATGGGCTACTAGAAATTCCTCAGGAATTCTCTCCCCCTACCATTTCACTAGAAGGGCTAATGGCGATAATGATATTACCACCAAGATACAATATTGTGGAATTTGCCACGGAGACATTCACCTCGTAAAGAACAAAATATGGCCGACCATTTATCCAACCGTGCCCGGGGAAATTCCCAAAATACCCATACAAGTATATTCTGTTTACTCTCCTTCTCAGTCCTTCCCTTGTTCAATTCTCAACCAACTTCCCAAGATCGATCCCCACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

105

Amino Acids

11.78

Weight (kDa)

8.47

Isoelectric Point (pI)

56.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029733)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0110601 RchiOBHm_Chr6g0270291

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 299
AcoI YGGCCR 1 cut(s) 185
AcsI RAATTY 4 cut(s) 58, 69, 144, 216
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 1 cut(s) 279
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 1 cut(s) 299
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 1 cut(s) 185
ApoI RAATTY 4 cut(s) 58, 69, 144, 216
AsuC2I CCSGG 2 cut(s) 210, 211
AsuHPI GGTGA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 209
AxyI CCTNAGG 1 cut(s) 64
BaeGI GKGCMC 1 cut(s) 210
BccI CCATC 1 cut(s) 39
BcnI CCSGG 2 cut(s) 210, 211
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 3 cut(s) 54, 93, 316
Bme1390I CCNGG 2 cut(s) 210, 211
BmeT110I CYCGRG 1 cut(s) 209
BmrFI CCNGG 2 cut(s) 210, 211
BpuMI CCSGG 2 cut(s) 210, 211
Bsa29I ATCGAT 1 cut(s) 303
BsaJI CCNNGG 3 cut(s) 151, 209, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse21I CCTNAGG 1 cut(s) 64
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 3 cut(s) 151, 209, 210
BseGI GGATG 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 2 cut(s) 78, 275
BseSI GKGCMC 1 cut(s) 210
BshFI GGCC 1 cut(s) 187
BshVI ATCGAT 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 150
BsnI GGCC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 2 cut(s) 300, 304
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 2 cut(s) 77, 274
BspDI ATCGAT 1 cut(s) 303
BspPI GGATC 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 151, 209, 210
BssMI GATC 2 cut(s) 300, 304
Bst4CI ACNGT 1 cut(s) 205
BstAPI GCANNNNNTGC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 64, 261
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 1 cut(s) 50
BstKTI GATC 2 cut(s) 303, 307
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 300, 304
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 2 cut(s) 208, 209
BstSLI GKGCMC 1 cut(s) 210
Bsu15I ATCGAT 1 cut(s) 303
Bsu36I CCTNAGG 1 cut(s) 64
BsuRI GGCC 1 cut(s) 187
BsuTUI ATCGAT 1 cut(s) 303
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 1 cut(s) 50
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 36
Cfr9I CCCGGG 1 cut(s) 209
ClaI ATCGAT 1 cut(s) 303
CviAII CATG 1 cut(s) 35
CviJI RGCY 4 cut(s) 17, 50, 101, 187
CviKI_1 RGCY 4 cut(s) 17, 50, 101, 187
DdeI CTNAG 2 cut(s) 64, 261
DpnI GATC 2 cut(s) 302, 306
DpnII GATC 2 cut(s) 300, 304
EaeI YGGCCR 1 cut(s) 185
Eco81I CCTNAGG 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 209
EcoRI GAATTC 1 cut(s) 69
FaeI CATG 1 cut(s) 38
FaiI YATR 5 cut(s) 36, 42, 184, 233, 241
FatI CATG 1 cut(s) 34
FokI GGATG 1 cut(s) 57
FspBI CTAG 3 cut(s) 54, 93, 316
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 210
Hin1II CATG 1 cut(s) 38
HpaII CCGG 1 cut(s) 210
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 250
Hpy188III TCNNGA 2 cut(s) 20, 66
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 3 cut(s) 90, 267, 277
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 64, 261
Hsp92II CATG 1 cut(s) 38
Kzo9I GATC 2 cut(s) 300, 304
LpnPI CCDG 3 cut(s) 27, 51, 223
MaeI CTAG 3 cut(s) 54, 93, 316
MalI GATC 2 cut(s) 302, 306
MboI GATC 2 cut(s) 300, 304
MboII GAAGA 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 5 cut(s) 58, 69, 144, 216, 279
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 2 cut(s) 73, 176
MslI CAYNNNNRTG 1 cut(s) 39
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 2 cut(s) 210, 211
MwoI GCNNNNNNNGC 1 cut(s) 35
NciI CCSGG 2 cut(s) 210, 211
NdeII GATC 2 cut(s) 300, 304
NlaIII CATG 1 cut(s) 38
NspI RCATGY 1 cut(s) 38
PaeI GCATGC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 39
Sau3AI GATC 2 cut(s) 300, 304
ScrFI CCNGG 2 cut(s) 210, 211
SduI GDGCHC 1 cut(s) 210
SetI ASST 2 cut(s) 19, 168
SmaI CCCGGG 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
SphI GCATGC 1 cut(s) 38
Sse9I AATT 5 cut(s) 58, 69, 144, 216, 279
SspI AATATT 1 cut(s) 137
SspMI CTAG 3 cut(s) 54, 93, 316
StyD4I CCNGG 2 cut(s) 208, 209
TaaI ACNGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 303
TasI AATT 5 cut(s) 58, 69, 144, 216, 279
TscAI CASTG 1 cut(s) 36
TspGWI ACGGA 1 cut(s) 168
TspMI CCCGGG 1 cut(s) 209
TspRI CASTG 1 cut(s) 36
XapI RAATTY 4 cut(s) 58, 69, 144, 216
XceI RCATGY 1 cut(s) 38
XmaI CCCGGG 1 cut(s) 209
XspI CTAG 3 cut(s) 54, 93, 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.