RchiOBHm_Chr2g0111331

Cupin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029725
Physical Location & Seq
Reverse (-)
22975702 .. 22976725
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48492

Sequence Viewer

Length: 216 bp
ATGGTGTTTCCTCGAGGTTTACTTCACTTCGTAGTAAATGGACGTGACACTGCAGCCCTTGTGTTTGCTACCCTCAATAGTGAAAACCCAGGTGTGCAGGGTCAAGAGAATGCACGCACTGCTTCAAAACGATTTACCTACGGAATTGATAGCGCAGAGTGCCGCAGACTACTTTCCTTGACACTGATCAGGTTAAGAAACTTCATCATCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

71

Amino Acids

7.95

Weight (kDa)

10.68

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 1 - 44 2.3e-07 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0029725)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0111331
rosa_roxburghii Rroxscaffold_2G00132490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 12
AciI CCGC 1 cut(s) 163
AgsI TTSAA 1 cut(s) 126
AjiI CACGTC 1 cut(s) 44
AjnI CCWGG 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 12
BbvI GCAGC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 90
BclI TGATCA 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 51
BisI GCNGC 2 cut(s) 54, 163
BlsI GCNGC 2 cut(s) 55, 164
Bme1390I CCNGG 1 cut(s) 90
BmeT110I CYCGRG 1 cut(s) 12
BmgBI CACGTC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 65
BsgI GTGCAG 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 12
BsmI GAATGC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 12
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 1 cut(s) 163
BspMAI CTGCAG 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 115
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstMWI GCNNNNNNNGC 2 cut(s) 119, 159
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 65
BtrI CACGTC 1 cut(s) 44
BtsI GCAGTG 2 cut(s) 48, 117
BtsIMutI CAGTG 3 cut(s) 48, 117, 182
Cac8I GCNNGC 1 cut(s) 115
CfoI GCGC 1 cut(s) 155
CviJI RGCY 1 cut(s) 56
CviKI_1 RGCY 1 cut(s) 56
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 88
FaiI YATR 1 cut(s) 214
FbaI TGATCA 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 54, 163
Fsp4HI GCNGC 2 cut(s) 54, 163
GlaI GCGC 1 cut(s) 154
GluI GCNGC 2 cut(s) 54, 163
HhaI GCGC 1 cut(s) 155
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
Hpy166II GTNNAC 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 1 cut(s) 20
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 3 cut(s) 53, 97, 113
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 159
HpySE526I ACGT 1 cut(s) 43
HspAI GCGC 1 cut(s) 153
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 1 cut(s) 186
LpnPI CCDG 4 cut(s) 75, 83, 102, 175
Lsp1109I GCAGC 1 cut(s) 65
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 44
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MluCI AATT 1 cut(s) 144
MnlI CCTC 3 cut(s) 8, 21, 83
MseI TTAA 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 115
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 119, 159
NdeII GATC 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 44
PaeR7I CTCGAG 1 cut(s) 12
PctI GAATGC 1 cut(s) 115
PkrI GCNGC 2 cut(s) 55, 164
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspXI VCTCGAGB 1 cut(s) 12
PstI CTGCAG 1 cut(s) 55
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 2 cut(s) 54, 163
Sau3AI GATC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 90
SetI ASST 5 cut(s) 19, 46, 94, 140, 194
SfcI CTRYAG 1 cut(s) 51
Sfr274I CTCGAG 1 cut(s) 12
SlaI CTCGAG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 1 cut(s) 144
SsiI CCGC 1 cut(s) 163
StyD4I CCNGG 1 cut(s) 88
TaiI ACGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 13
TasI AATT 1 cut(s) 144
TauI GCSGC 1 cut(s) 165
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 3 cut(s) 55, 124, 189
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 193
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 3 cut(s) 55, 124, 189
XhoI CTCGAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.