Rroxscaffold_2G00132490

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0029725
Physical Location & Seq
Forward (+)
69489300 .. 69490826
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00132490.1

Sequence Viewer

Length: 459 bp
ATGAAAAGACTATGCAAAAGAGGGAATCCAAATCGGGTTTTAAATGGGAAAGGGGGGTTTTGTGGACGAAAAGGGCAAGCGTGGTTTGGGGATATTACGGGGAGAGTAGGCAGTGGTGGTGGGAAGTGGGGAGGGTATTTTGGTGATTTGGGAAGAGGACGCGTGGCGATTGCTTGGGGAGCAATCCTCTCTGCAATGCTGCAGAGGGGAGCAATTATGGTGTTTCCTCGAGGTTTACTTCACTTCGTAGTAAATGGACGTGACACTGCAGCCCTTGTGTTTGCTACCCTCAATAGTGAAAACCCAGGTGTGCAGGGTCAAGAGAATGCACTGCTTCAAAACGATTTACCTACGGAATTGATGCAGACTACTGTCCCTGACACTGATCAGGTTACGAAACTTCATAATCTTATAGGTGGGACTGATCTTGATACACTTGAAAGCATTGTAACTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

152

Amino Acids

16.2

Weight (kDa)

9.44

Isoelectric Point (pI)

14.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 64 - 122 7.9e-10 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029725)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0111331
rosa_roxburghii Rroxscaffold_2G00132490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 228
AccII CGCG 1 cut(s) 162
AflIII ACRYGT 1 cut(s) 160
AgsI TTSAA 2 cut(s) 338, 440
AjiI CACGTC 1 cut(s) 260
AjnI CCWGG 1 cut(s) 304
Ama87I CYCGRG 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 199, 269
AsuHPI GGTGA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 228
BbvI GCAGC 2 cut(s) 186, 281
BciT130I CCWGG 1 cut(s) 306
BclI TGATCA 1 cut(s) 385
BfmI CTRYAG 2 cut(s) 200, 267
BisI GCNGC 2 cut(s) 200, 270
BlsI GCNGC 2 cut(s) 201, 271
Bme1390I CCNGG 1 cut(s) 306
BmeT110I CYCGRG 1 cut(s) 228
BmgBI CACGTC 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 1 cut(s) 351
BoxI GACNNNNGTC 1 cut(s) 371
BplI GAGNNNNNCTC 2 cut(s) 171, 203
BsaJI CCNNGG 1 cut(s) 304
Bse3DI GCAATG 1 cut(s) 201
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 304
BseMI GCAATG 1 cut(s) 201
BseXI GCAGC 2 cut(s) 186, 281
BsgI GTGCAG 1 cut(s) 332
Bsh1236I CGCG 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 228
BslFI GGGAC 2 cut(s) 359, 433
BsmFI GGGAC 2 cut(s) 359, 433
BsmI GAATGC 1 cut(s) 331
BsoBI CYCGRG 1 cut(s) 228
Bsp143I GATC 2 cut(s) 385, 424
BspFNI CGCG 1 cut(s) 162
BspMAI CTGCAG 2 cut(s) 204, 271
BsrDI GCAATG 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 2 cut(s) 385, 424
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 78
BstFNI CGCG 1 cut(s) 162
BstKTI GATC 2 cut(s) 388, 427
BstMBI GATC 2 cut(s) 385, 424
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 306
BstPAI GACNNNNGTC 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 2 cut(s) 200, 267
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 186, 281
BtrI CACGTC 1 cut(s) 260
BtsI GCAGTG 3 cut(s) 118, 264, 329
BtsIMutI CAGTG 4 cut(s) 118, 264, 329, 381
Cac8I GCNNGC 1 cut(s) 78
CseI GACGC 1 cut(s) 168
CviJI RGCY 1 cut(s) 272
CviKI_1 RGCY 1 cut(s) 272
DpnI GATC 2 cut(s) 387, 426
DpnII GATC 2 cut(s) 385, 424
DraI TTTAAA 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 304
FaiI YATR 5 cut(s) 13, 218, 405, 413, 457
FaqI GGGAC 2 cut(s) 359, 433
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 200, 270
Fsp4HI GCNGC 2 cut(s) 200, 270
GluI GCNGC 2 cut(s) 200, 270
HgaI GACGC 1 cut(s) 168
HinfI GANTC 1 cut(s) 25
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 65, 236
Hpy188III TCNNGA 2 cut(s) 320, 428
Hpy8I GTNNAC 2 cut(s) 65, 236
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 7 cut(s) 15, 194, 202, 269, 313, 329, 364
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpySE526I ACGT 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 2 cut(s) 385, 424
LmnI GCTCC 2 cut(s) 179, 209
LpnPI CCDG 5 cut(s) 291, 299, 318, 374, 390
Lsp1109I GCAGC 2 cut(s) 186, 281
LweI GCATC 1 cut(s) 351
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 3 cut(s) 260, 391, 448
MalI GATC 2 cut(s) 387, 426
MboI GATC 2 cut(s) 385, 424
MboII GAAGA 1 cut(s) 165
MluCI AATT 2 cut(s) 213, 356
MluI ACGCGT 1 cut(s) 160
MnlI CCTC 8 cut(s) 14, 125, 149, 197, 198, 224, 237, 299
MseI TTAA 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 306
Mva1269I GAATGC 1 cut(s) 331
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 2 cut(s) 385, 424
NmuCI GTSAC 1 cut(s) 260
PaeR7I CTCGAG 1 cut(s) 228
PctI GAATGC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 2 cut(s) 201, 271
PshAI GACNNNNGTC 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspXI VCTCGAGB 1 cut(s) 228
PstI CTGCAG 2 cut(s) 204, 271
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 2 cut(s) 200, 270
Sau3AI GATC 2 cut(s) 385, 424
ScrFI CCNGG 1 cut(s) 306
SetI ASST 6 cut(s) 235, 262, 310, 352, 393, 418
SfaNI GCATC 1 cut(s) 351
SfcI CTRYAG 2 cut(s) 200, 267
Sfr274I CTCGAG 1 cut(s) 228
SlaI CTCGAG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
Sse9I AATT 2 cut(s) 213, 356
StyD4I CCNGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 1 cut(s) 262
TaqI TCGA 1 cut(s) 229
TasI AATT 2 cut(s) 213, 356
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 4 cut(s) 118, 271, 336, 388
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 2 cut(s) 199, 269
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 2 cut(s) 17, 392
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 4 cut(s) 118, 271, 336, 388
XhoI CTCGAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.