Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029768

Physical Location & Seq

Genomic Coordinates Forward (+)

32222472 .. 32224473

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49234

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTTTGTGTTTGTGAGAAAGGGAGTCGGAAAGAGAGCAAGAGAGCTATCAGAGAGAGTCAGACAGGTGGCGATGGAAACAACGGTGGAGGATGTGGTGATAGTGGGGGCAGGGATAGCTGGTTTGGCCACGGCAGTGGCGTTGAAGAGTGCAGGAATTGAAGCGCTTGTGTTGGAGAGATCTGAAGGGCTGAGAGCCACAGGTGCAGCCTTGATCGACTCTATACCCCAACGCTTGTCATACTCGTCCAGTTCTACTACTGCACTTGTACTCGTGTTCTGCTACTGCATTCGTCGTCGCCTAATCCTGCTACTGCACTCATACTCATCCAGTTCTGCTACTGCATTCGTGATCGCCTACTCCTGCTACTGCACTAGTCTAATGCTGCTACTACACTCGCTGCAGTCATGCTCATCCAATTTTGCTACTGCCCTCGTATTCGTGTTCTGCTACTGCGCTTGCTACACTCCTGAAAACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

160

Amino Acids

17.27

Weight (kDa)

8.67

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	31 - 69	3.2e-07	FAD dependent oxidoreductase
FAD_binding_3	PF01494	31 - 65	7.6e-06	FAD binding domain
NAD_binding_8	PF13450	34 - 64	5.2e-06	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0029768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0119651
rosa_multiflora	Rmu_sc0001501.1_g000096

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	1 cut(s)	270
AfeI	AGCGCT	1 cut(s)	165
AgsI	TTSAA	2 cut(s)	145, 161
AhlI	ACTAGT	1 cut(s)	374
AleI	CACNNNNGTG	1 cut(s)	134
AluBI	AGCT	2 cut(s)	46, 119
AluI	AGCT	2 cut(s)	46, 119
Aor51HI	AGCGCT	1 cut(s)	165
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	3 cut(s)	206, 385, 400
AspLEI	GCGC	2 cut(s)	166, 458
AsuHPI	GGTGA	1 cut(s)	109
BalI	TGGCCA	1 cut(s)	128
BauI	CACGAG	1 cut(s)	272
BbvI	GCAGC	3 cut(s)	218, 372, 387
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	147
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	1 cut(s)	401
BfoI	RGCGCY	1 cut(s)	167
BglII	AGATCT	1 cut(s)	179
BisI	GCNGC	3 cut(s)	207, 386, 401
BlsI	GCNGC	3 cut(s)	208, 387, 402
BsaJI	CCNNGG	1 cut(s)	129
Bse1I	ACTGG	2 cut(s)	249, 330
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	3 cut(s)	97, 326, 413
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	2 cut(s)	249, 330
BseXI	GCAGC	3 cut(s)	218, 372, 387
BsgI	GTGCAG	5 cut(s)	171, 225, 246, 299, 355
BshFI	GGCC	1 cut(s)	128
BsmI	GAATGC	2 cut(s)	288, 344
BsnI	GGCC	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	179, 213, 351
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	405
BsrI	ACTGG	2 cut(s)	249, 330
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	3 cut(s)	179, 213, 351
BssSI	CACGAG	1 cut(s)	272
Bst2BI	CACGAG	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	1 cut(s)	191
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	3 cut(s)	97, 326, 413
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	2 cut(s)	166, 458
BstKTI	GATC	3 cut(s)	182, 216, 354
BstMBI	GATC	3 cut(s)	179, 213, 351
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 125, 203
BstSFI	CTRYAG	1 cut(s)	401
BstV1I	GCAGC	3 cut(s)	218, 372, 387
BstX2I	RGATCY	1 cut(s)	179
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	86
BtsCI	GGATG	3 cut(s)	97, 326, 413
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	460
CfoI	GCGC	2 cut(s)	166, 458
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	1 cut(s)	408
CviJI	RGCY	6 cut(s)	46, 119, 128, 190, 197, 209
CviKI_1	RGCY	6 cut(s)	46, 119, 128, 190, 197, 209
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	3 cut(s)	181, 215, 353
DpnII	GATC	3 cut(s)	179, 213, 351
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco47III	AGCGCT	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	204
FaeI	CATG	1 cut(s)	411
FaiI	YATR	4 cut(s)	224, 241, 322, 409
FatI	CATG	1 cut(s)	407
Fnu4HI	GCNGC	3 cut(s)	207, 386, 401
FokI	GGATG	3 cut(s)	104, 313, 400
Fsp4HI	GCNGC	3 cut(s)	207, 386, 401
FspBI	CTAG	1 cut(s)	375
GlaI	GCGC	2 cut(s)	165, 457
GluI	GCNGC	3 cut(s)	207, 386, 401
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	128
HhaI	GCGC	2 cut(s)	166, 458
Hin1II	CATG	1 cut(s)	411
Hin6I	GCGC	2 cut(s)	164, 456
HinP1I	GCGC	2 cut(s)	164, 456
HinfI	GANTC	3 cut(s)	24, 57, 218
HphI	GGTGA	1 cut(s)	109
Hpy188I	TCNGA	4 cut(s)	29, 52, 62, 184
Hpy188III	TCNNGA	2 cut(s)	349, 470
Hpy99I	CGWCG	2 cut(s)	297, 300
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	8 cut(s)	152, 206, 263, 288, 316, 344, 372, 403
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 125, 203
HpyF3I	CTNAG	1 cut(s)	191
Hsp92II	CATG	1 cut(s)	411
HspAI	GCGC	2 cut(s)	164, 456
Kzo9I	GATC	3 cut(s)	179, 213, 351
LpnPI	CCDG	9 cut(s)	50, 96, 105, 138, 186, 262, 320, 343, 376
Lsp1109I	GCAGC	3 cut(s)	218, 372, 387
MaeI	CTAG	1 cut(s)	375
MalI	GATC	3 cut(s)	181, 215, 353
MboI	GATC	3 cut(s)	179, 213, 351
MboII	GAAGA	1 cut(s)	157
MflI	RGATCY	1 cut(s)	179
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	2 cut(s)	156, 418
MluNI	TGGCCA	1 cut(s)	128
MlyI	GAGTC	3 cut(s)	33, 66, 212
MmeI	TCCRAC	2 cut(s)	7, 153
MnlI	CCTC	2 cut(s)	82, 443
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	1 cut(s)	481
MslI	CAYNNNNRTG	1 cut(s)	134
Msp20I	TGGCCA	1 cut(s)	128
Mva1269I	GAATGC	2 cut(s)	288, 344
MwoI	GCNNNNNNNGC	3 cut(s)	116, 125, 203
NdeII	GATC	3 cut(s)	179, 213, 351
NlaIII	CATG	1 cut(s)	411
OliI	CACNNNNGTG	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PctI	GAATGC	2 cut(s)	288, 344
PkrI	GCNGC	3 cut(s)	208, 387, 402
PleI	GAGTC	3 cut(s)	32, 65, 212
PpsI	GAGTC	3 cut(s)	32, 65, 212
PstI	CTGCAG	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	179
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	481
SatI	GCNGC	3 cut(s)	207, 386, 401
Sau3AI	GATC	3 cut(s)	179, 213, 351
SchI	GAGTC	3 cut(s)	33, 66, 212
SetI	ASST	4 cut(s)	48, 69, 121, 205
SfcI	CTRYAG	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	134
SpeI	ACTAGT	1 cut(s)	374
Sse9I	AATT	2 cut(s)	156, 418
SspMI	CTAG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	216
TasI	AATT	2 cut(s)	156, 418
TatI	WGTACW	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	481
Tru9I	TTAA	1 cut(s)	481
TscAI	CASTG	1 cut(s)	141
TseI	GCWGC	3 cut(s)	206, 385, 400
TspRI	CASTG	1 cut(s)	141
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.