Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001501.1

Orthogroup ID

OG0029768

Physical Location & Seq

Genomic Coordinates Reverse (-)

401747 .. 402001

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001501.1_g000096.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atgtttgtgtttgtgagaaagggagtcgaaaagagagcacgagagctatcagagagagaaactcagacaggtggcgatggaaacaacggtggaggatgtggtgatagagtgggggcagggatagctggtttggccacggcagtggcgttgaagggtgcaggaattgaagcgcttgtgttggagagatctgaagggctgagagccacaggtgcagccttgatcgactctataccccaacgcttggtctgcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

84

Amino Acids

8.62

Weight (kDa)

7.8

Isoelectric Point (pI)

24.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0119651
rosa_multiflora	Rmu_sc0001501.1_g000096

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	241
AcoI	YGGCCR	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	210
AfeI	AGCGCT	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	151, 167
AleI	CACNNNNGTG	1 cut(s)	140
AluBI	AGCT	2 cut(s)	46, 125
AluI	AGCT	2 cut(s)	46, 125
Alw21I	GWGCWC	1 cut(s)	40
Aor51HI	AGCGCT	1 cut(s)	171
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	134
BauI	CACGAG	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	153
BfoI	RGCGCY	1 cut(s)	173
BglII	AGATCT	1 cut(s)	185
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	2 cut(s)	77, 188
BseXI	GCAGC	1 cut(s)	224
BsgI	GTGCAG	2 cut(s)	177, 231
BshFI	GGCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	241
BsnI	GGCC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	185, 219
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	2 cut(s)	76, 189
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	185, 219
BssSI	CACGAG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	63, 197
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	2 cut(s)	188, 222
BstMBI	GATC	2 cut(s)	185, 219
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 131, 209, 246
BstV1I	GCAGC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	185
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	134
BtgI	CCRYGG	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	101
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	147
CfoI	GCGC	1 cut(s)	172
CviJI	RGCY	6 cut(s)	46, 125, 134, 196, 203, 215
CviKI_1	RGCY	6 cut(s)	46, 125, 134, 196, 203, 215
DdeI	CTNAG	2 cut(s)	63, 197
DpnI	GATC	2 cut(s)	187, 221
DpnII	GATC	2 cut(s)	185, 219
EaeI	YGGCCR	1 cut(s)	132
Eco47III	AGCGCT	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	210
FaiI	YATR	1 cut(s)	230
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	213
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	2 cut(s)	24, 224
HphI	GGTGA	1 cut(s)	113
Hpy188I	TCNGA	3 cut(s)	52, 66, 190
HpyAV	CCTTC	2 cut(s)	145, 185
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	2 cut(s)	158, 212
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 131, 209, 246
HpyF3I	CTNAG	2 cut(s)	63, 197
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	2 cut(s)	185, 219
LpnPI	CCDG	5 cut(s)	54, 102, 111, 144, 192
Lsp1109I	GCAGC	1 cut(s)	224
MalI	GATC	2 cut(s)	187, 221
MboI	GATC	2 cut(s)	185, 219
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	1 cut(s)	162
MluNI	TGGCCA	1 cut(s)	134
MlyI	GAGTC	2 cut(s)	33, 218
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	1 cut(s)	86
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
MslI	CAYNNNNRTG	1 cut(s)	140
Msp20I	TGGCCA	1 cut(s)	134
MwoI	GCNNNNNNNGC	4 cut(s)	122, 131, 209, 246
NdeII	GATC	2 cut(s)	185, 219
OliI	CACNNNNGTG	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	143
PflMI	CCANNNNNTGG	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	2 cut(s)	32, 218
PpsI	GAGTC	2 cut(s)	32, 218
PsuI	RGATCY	1 cut(s)	185
RseI	CAYNNNNRTG	1 cut(s)	140
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	2 cut(s)	185, 219
SchI	GAGTC	2 cut(s)	33, 218
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	4 cut(s)	48, 73, 127, 211
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	89
TaqI	TCGA	2 cut(s)	27, 222
TasI	AATT	1 cut(s)	162
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	1 cut(s)	212
TspRI	CASTG	1 cut(s)	147
Van91I	CCANNNNNTGG	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.