RchiOBHm_Chr2g0120041

Protein of unknown function (DUF502)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029865
Physical Location & Seq
Reverse (-)
32725836 .. 32730918
5083 bp
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UTR
Exon/CDS
Intron
PRQ49269

Sequence Viewer

Length: 435 bp
ATGGGTGCCACTGTTTGCTCTCTTAGAGAATGGATTATAAAGAAAATGTCTTTTGTTAAGCATATCTACTCAGCCTCCAAACAAATTAGTTCCGCAATTTCTTCAAACCAAAATACCACAGCTTTTAAAGAGGTAGCAATTATTCGTGACCCACGCGCGTGTTGGCGAATATGCTTTTGGGTTTATTACATCAACCGTTACCTTCAGAGAGATAACGAAGATGAAGAGTTATGTAGTGTTTTTGTCCCAACAAATCATCTATATATAGGTGATATATTTCTCGTTAACTCCAAAGATATCATAAGACCAAATCTGTCTATCCGAGAAGGCATAGAGATCATTGTTTCTGGGGATATGACAATGCCCCAAATCATTTCTCCTCAAGAAAGGGTTACCCAACAGAGTGATAAAATTCCTTTGAACAGAATAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF502

Protein Analysis

144

Amino Acids

16.7

Weight (kDa)

8.72

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF502 PF04367 2 - 86 5.3e-15 Protein of unknown function (DUF502)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0029865)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0120041 RchiOBHm_Chr3g0477331

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
AccB1I GGYRCC 1 cut(s) 5
AccII CGCG 2 cut(s) 156, 158
AciI CCGC 1 cut(s) 93
AcsI RAATTY 1 cut(s) 411
AcuI CTGAAG 1 cut(s) 188
AgsI TTSAA 2 cut(s) 105, 421
AjuI GAANNNNNNNTTGG 2 cut(s) 160, 192
AleI CACNNNNGTG 1 cut(s) 157
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
ApoI RAATTY 1 cut(s) 411
AspLEI GCGC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 281
BanI GGYRCC 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 366
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
BseMII CTCAG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 369
Bsh1236I CGCG 2 cut(s) 156, 158
BshNI GGYRCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 336
BspACI CCGC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 83
BspFNI CGCG 2 cut(s) 156, 158
BspLI GGNNCC 1 cut(s) 7
BspT107I GGYRCC 1 cut(s) 5
BssMI GATC 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 13, 197
Bst6I CTCTTC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 23, 70
BstEII GGTNACC 1 cut(s) 391
BstFNI CGCG 2 cut(s) 156, 158
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 1 cut(s) 339
BstMBI GATC 1 cut(s) 336
BstPI GGTNACC 1 cut(s) 391
BstUI CGCG 2 cut(s) 156, 158
BtsIMutI CAGTG 1 cut(s) 9
CfoI GCGC 1 cut(s) 158
CviJI RGCY 2 cut(s) 74, 122
CviKI_1 RGCY 2 cut(s) 74, 122
DdeI CTNAG 2 cut(s) 23, 70
DpnI GATC 1 cut(s) 338
DpnII GATC 1 cut(s) 336
DraI TTTAAA 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco32I GATATC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 188
Eco91I GGTNACC 1 cut(s) 391
EcoO65I GGTNACC 1 cut(s) 391
EcoRV GATATC 1 cut(s) 298
FaqI GGGAC 1 cut(s) 230
GlaI GCGC 1 cut(s) 157
HhaI GCGC 1 cut(s) 158
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HpaI GTTAAC 1 cut(s) 286
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 2 cut(s) 207, 323
Hpy188III TCNNGA 2 cut(s) 146, 383
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 212, 320
HpyCH4III ACNGT 2 cut(s) 13, 197
HpyF3I CTNAG 2 cut(s) 23, 70
HspAI GCGC 1 cut(s) 156
KspAI GTTAAC 1 cut(s) 286
Kzo9I GATC 1 cut(s) 336
LpnPI CCDG 1 cut(s) 333
MaeIII GTNAC 3 cut(s) 146, 197, 391
MalI GATC 1 cut(s) 338
MboI GATC 1 cut(s) 336
MboII GAAGA 3 cut(s) 93, 230, 236
MluCI AATT 4 cut(s) 84, 96, 138, 411
MnlI CCTC 3 cut(s) 85, 124, 390
MseI TTAA 3 cut(s) 57, 126, 285
MslI CAYNNNNRTG 1 cut(s) 157
MvnI CGCG 2 cut(s) 156, 158
NdeII GATC 1 cut(s) 336
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 146
OliI CACNNNNGTG 1 cut(s) 157
PsiI TTATAA 1 cut(s) 38
PspEI GGTNACC 1 cut(s) 391
PspN4I GGNNCC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 157
SaqAI TTAA 3 cut(s) 57, 126, 285
Sau3AI GATC 1 cut(s) 336
SetI ASST 4 cut(s) 124, 135, 204, 271
SgeI CNNG 9 cut(s) 158, 165, 167, 169, 171, 293, 335, 360, 395
SmiMI CAYNNNNRTG 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 381
SmoI CTYRAG 1 cut(s) 381
Sse9I AATT 4 cut(s) 84, 96, 138, 411
SsiI CCGC 1 cut(s) 93
TaaI ACNGT 2 cut(s) 13, 197
TasI AATT 4 cut(s) 84, 96, 138, 411
Tru1I TTAA 3 cut(s) 57, 126, 285
Tru9I TTAA 3 cut(s) 57, 126, 285
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 237
TspRI CASTG 1 cut(s) 16
XapI RAATTY 1 cut(s) 411
XcmI CCANNNNNNNNNTGG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.