RchiOBHm_Chr2g0120591

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029854
Physical Location & Seq
Reverse (-)
33361029 .. 33362109
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49319

Sequence Viewer

Length: 372 bp
ATGCTTTTCATCTTCAACTTAGACCAGACAACGTGCCTGTCCCTTTCTTCTTTTCTTCTGTCAGCTGAAGCTAAAGTAGAAGTGCAGATCGGAGAAGTGCAGCGTGACGGGTATCCGTGGAGCTGTTGCGGCGGATCAGCTCTGTTCGCCAAATCTGATGGCACCGGTGATGATTCTCCTCGGCGACAGGTCGTCCGGCGTCTGGATGGATGCAGGTCGGGCTTGCCCAAGCAACGGAGCCAGCTGCTGTTCGGTTCACGGCAATGGAAACAGCTGCAGGCGGAGGATCCGAGAGCCGGAGAAGGTCGGGGTTCAACAAGTCTGAGTCAGCGATCGAAATCTAGGTTTGGGTCGAAGGACGCCGGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.46

Weight (kDa)

9.1

Isoelectric Point (pI)

55.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029854)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0120591
rosa_multiflora Rmu_sc0002727.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 161
AciI CCGC 3 cut(s) 129, 132, 281
AclWI GGATC 3 cut(s) 142, 281, 294
AcuI CTGAAG 1 cut(s) 87
AcyI GRCGYC 2 cut(s) 199, 360
AfiI CCNNNNNNNGG 3 cut(s) 202, 234, 296
AgeI ACCGGT 1 cut(s) 164
AgsI TTSAA 2 cut(s) 16, 315
AhdI GACNNNNNGTC 1 cut(s) 191
AluBI AGCT 6 cut(s) 65, 71, 123, 140, 244, 274
AluI AGCT 6 cut(s) 65, 71, 123, 140, 244, 274
AlwI GGATC 3 cut(s) 142, 281, 294
AlwNI CAGNNNCTG 1 cut(s) 247
ApeKI GCWGC 3 cut(s) 100, 244, 274
AsiGI ACCGGT 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 179
BamHI GGATCC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 161
BbvI GCAGC 3 cut(s) 112, 231, 261
BccI CCATC 2 cut(s) 152, 200
BceAI ACGGC 1 cut(s) 275
BciVI GTATCC 1 cut(s) 123
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 275
BfuAI ACCTGC 1 cut(s) 204
BfuI GTATCC 1 cut(s) 123
BisI GCNGC 4 cut(s) 101, 130, 245, 275
BlsI GCNGC 4 cut(s) 102, 131, 246, 276
BmeRI GACNNNNNGTC 1 cut(s) 191
BmiI GGNNCC 3 cut(s) 163, 239, 288
BmsI GCATC 1 cut(s) 200
BsaBI GATNNNNATC 1 cut(s) 337
BsaHI GRCGYC 2 cut(s) 199, 360
BsaJI CCNNGG 2 cut(s) 116, 179
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 234, 296
Bse118I RCCGGY 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 337
BseDI CCNNGG 2 cut(s) 116, 179
BseGI GGATG 2 cut(s) 211, 215
BseJI GATNNNNATC 1 cut(s) 337
BseLI CCNNNNNNNGG 3 cut(s) 202, 234, 296
BseMI GCAATG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 168
BseXI GCAGC 3 cut(s) 112, 231, 261
BsgI GTGCAG 2 cut(s) 104, 119
Bsh1285I CGRYCG 1 cut(s) 335
BshNI GGYRCC 1 cut(s) 161
BshTI ACCGGT 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 335
BsiSI CCGG 4 cut(s) 165, 196, 297, 363
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 3 cut(s) 202, 234, 296
BsmFI GGGAC 1 cut(s) 25
Bsp143I GATC 4 cut(s) 87, 134, 286, 332
BspACI CCGC 3 cut(s) 129, 132, 281
BspCNI CTCAG 1 cut(s) 315
BspLI GGNNCC 3 cut(s) 163, 239, 288
BspMAI CTGCAG 1 cut(s) 279
BspMI ACCTGC 1 cut(s) 204
BspPI GGATC 3 cut(s) 142, 281, 294
BspT107I GGYRCC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 116, 179
BssMI GATC 4 cut(s) 87, 134, 286, 332
BssNI GRCGYC 2 cut(s) 199, 360
BstACI GRCGYC 2 cut(s) 199, 360
BstC8I GCNNGC 3 cut(s) 224, 242, 279
BstDEI CTNAG 2 cut(s) 19, 323
BstDSI CCRYGG 1 cut(s) 116
BstF5I GGATG 2 cut(s) 211, 215
BstKTI GATC 4 cut(s) 90, 137, 289, 335
BstMBI GATC 4 cut(s) 87, 134, 286, 332
BstMCI CGRYCG 1 cut(s) 335
BstMWI GCNNNNNNNGC 3 cut(s) 129, 146, 219
BstSFI CTRYAG 1 cut(s) 275
BstV1I GCAGC 3 cut(s) 112, 231, 261
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BsuI GTATCC 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 116
BtsCI GGATG 2 cut(s) 211, 215
BveI ACCTGC 1 cut(s) 204
Cac8I GCNNGC 3 cut(s) 224, 242, 279
CaiI CAGNNNCTG 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 164
CseI GACGC 1 cut(s) 188
CspAI ACCGGT 1 cut(s) 164
CviJI RGCY 9 cut(s) 65, 71, 123, 140, 222, 240, 244, 274, 296
CviKI_1 RGCY 9 cut(s) 65, 71, 123, 140, 222, 240, 244, 274, 296
DdeI CTNAG 2 cut(s) 19, 323
DpnI GATC 4 cut(s) 89, 136, 288, 334
DpnII GATC 4 cut(s) 87, 134, 286, 332
DriI GACNNNNNGTC 1 cut(s) 191
Eam1105I GACNNNNNGTC 1 cut(s) 191
EciI GGCGGA 2 cut(s) 147, 296
Eco57I CTGAAG 1 cut(s) 87
FaqI GGGAC 1 cut(s) 25
Fnu4HI GCNGC 4 cut(s) 101, 130, 245, 275
FokI GGATG 2 cut(s) 218, 222
Fsp4HI GCNGC 4 cut(s) 101, 130, 245, 275
FspBI CTAG 1 cut(s) 342
GluI GCNGC 4 cut(s) 101, 130, 245, 275
HapII CCGG 4 cut(s) 165, 196, 297, 363
HgaI GACGC 1 cut(s) 188
Hin1I GRCGYC 2 cut(s) 199, 360
HinfI GANTC 2 cut(s) 173, 325
HpaII CCGG 4 cut(s) 165, 196, 297, 363
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 4 cut(s) 92, 157, 291, 324
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 257
HpyAV CCTTC 2 cut(s) 296, 349
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 4 cut(s) 85, 100, 213, 277
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 146, 219
HpyF3I CTNAG 2 cut(s) 19, 323
HpySE526I ACGT 1 cut(s) 32
Hsp92I GRCGYC 2 cut(s) 199, 360
Kzo9I GATC 4 cut(s) 87, 134, 286, 332
LmnI GCTCC 2 cut(s) 120, 237
Lsp1109I GCAGC 3 cut(s) 112, 231, 261
LweI GCATC 1 cut(s) 200
MaeI CTAG 1 cut(s) 342
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 104
MalI GATC 4 cut(s) 89, 136, 288, 334
MboI GATC 4 cut(s) 87, 134, 286, 332
MboII GAAGA 3 cut(s) 4, 39, 47
MflI RGATCY 1 cut(s) 286
MlyI GAGTC 1 cut(s) 334
MnlI CCTC 2 cut(s) 189, 277
MslI CAYNNNNRTG 1 cut(s) 262
MspA1I CMGCKG 3 cut(s) 65, 244, 274
MspI CCGG 4 cut(s) 165, 196, 297, 363
MwoI GCNNNNNNNGC 3 cut(s) 129, 146, 219
NdeII GATC 4 cut(s) 87, 134, 286, 332
NlaIV GGNNCC 3 cut(s) 163, 239, 288
NmeAIII GCCGAG 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 173
PinAI ACCGGT 1 cut(s) 164
PkrI GCNGC 4 cut(s) 102, 131, 246, 276
Ple19I CGATCG 1 cut(s) 335
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
PspN4I GGNNCC 3 cut(s) 163, 239, 288
PstI CTGCAG 1 cut(s) 279
PstNI CAGNNNCTG 1 cut(s) 247
PsuI RGATCY 1 cut(s) 286
PvuI CGATCG 1 cut(s) 335
PvuII CAGCTG 3 cut(s) 65, 244, 274
RseI CAYNNNNRTG 1 cut(s) 262
SatI GCNGC 4 cut(s) 101, 130, 245, 275
Sau3AI GATC 4 cut(s) 87, 134, 286, 332
SchI GAGTC 1 cut(s) 334
SfaNI GCATC 1 cut(s) 200
SfcI CTRYAG 1 cut(s) 275
SgrAI CRCCGGYG 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 262
SsiI CCGC 3 cut(s) 129, 132, 281
SspMI CTAG 1 cut(s) 342
TaiI ACGT 1 cut(s) 35
TaqI TCGA 2 cut(s) 335, 353
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 1 cut(s) 173
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 3 cut(s) 100, 244, 274
Tsp45I GTSAC 1 cut(s) 104
TspGWI ACGGA 2 cut(s) 105, 250
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.