RchiOBHm_Chr2g0130761

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0024872
Physical Location & Seq
Forward (+)
46840088 .. 46845417
5330 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50218

Sequence Viewer

Length: 417 bp
ATGAGGAAGCGGGGACTAAAACTCAAAATTTTCACACTTAGAAAAAAAATTGCGCCCGACCCCAAAACTGAAACACAAACCCTAAGCTCATTGTCGACCTCCATTCTCAACCCAGACTCGAGCTCCTCCTCCTCCTCCTCACCATCACAATCCTCCCTCCTTCATTCTCAGGAGGAATCTGAAGCGCCGAGATCCCGACCTCGATCTAAAATTGAAGTAACAGCTCTGAATCCTGAGCCAGGCCTCGATCTGAGATTGGCAGAGTTGAAGAAATTAAAGAGGAATGGTTCTTTCCTCTCAAGCCCCACCGAAGTCGGGGTTGGAGCCCTAAACTCGAACACAGCAACCCAGCTGCACTCAACTGCGCCATTTCTGACTCTCTCCGTGACTCCGTGTCTCCGTCTCCGCCATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.02

Weight (kDa)

10.33

Isoelectric Point (pI)

67.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024872)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0130761
rosa_multiflora Rmu_co8416761.1_g000001 Rmu_ssc0000114.1_g000037

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 95
AciI CCGC 2 cut(s) 10, 406
AclWI GGATC 1 cut(s) 186
AcsI RAATTY 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 201
AfiI CCNNNNNNNGG 2 cut(s) 239, 315
AgsI TTSAA 2 cut(s) 215, 268
AhdI GACNNNNNGTC 1 cut(s) 393
AjnI CCWGG 1 cut(s) 238
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
AluBI AGCT 4 cut(s) 87, 123, 224, 352
AluI AGCT 4 cut(s) 87, 123, 224, 352
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 2 cut(s) 401, 407
AlwI GGATC 1 cut(s) 186
Ama87I CYCGRG 1 cut(s) 118
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 1 cut(s) 352
ApoI RAATTY 1 cut(s) 27
AspLEI GCGC 3 cut(s) 55, 187, 367
AsuHPI GGTGA 1 cut(s) 132
AvaI CYCGRG 1 cut(s) 118
BanII GRGCYC 2 cut(s) 125, 328
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 339
BccI CCATC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 240
BcoDI GTCTC 2 cut(s) 401, 407
BfoI RGCGCY 1 cut(s) 188
BisI GCNGC 1 cut(s) 353
BlsI GCNGC 1 cut(s) 354
Bme1390I CCNGG 1 cut(s) 240
BmeRI GACNNNNNGTC 1 cut(s) 393
BmeT110I CYCGRG 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 1 cut(s) 240
Bpu10I CCTNAGC 2 cut(s) 83, 234
BpuEI CTTGAG 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 315
BseBI CCWGG 1 cut(s) 240
BseLI CCNNNNNNNGG 2 cut(s) 239, 315
BseMII CTCAG 3 cut(s) 182, 225, 242
BseRI GAGGAG 5 cut(s) 115, 118, 121, 124, 127
BseXI GCAGC 1 cut(s) 339
BseYI CCCAGC 1 cut(s) 348
BsgI GTGCAG 1 cut(s) 338
BshFI GGCC 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 118
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 2 cut(s) 239, 315
BsmAI GTCTC 2 cut(s) 401, 407
BsmBI CGTCTC 1 cut(s) 407
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 1 cut(s) 243
BsoBI CYCGRG 1 cut(s) 118
Bsp1286I GDGCHC 2 cut(s) 125, 328
Bsp143I GATC 3 cut(s) 191, 203, 247
BspACI CCGC 2 cut(s) 10, 406
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 3 cut(s) 181, 226, 243
BspLI GGNNCC 1 cut(s) 325
BspPI GGATC 1 cut(s) 186
BssMI GATC 3 cut(s) 191, 203, 247
Bst2UI CCWGG 1 cut(s) 240
BstDEI CTNAG 5 cut(s) 38, 83, 168, 234, 251
BstENI CCTNNNNNAGG 1 cut(s) 237
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 3 cut(s) 55, 187, 367
BstKTI GATC 3 cut(s) 194, 206, 250
BstMAI GTCTC 2 cut(s) 401, 407
BstMBI GATC 3 cut(s) 191, 203, 247
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 1 cut(s) 243
CfoI GCGC 3 cut(s) 55, 187, 367
CviJI RGCY 8 cut(s) 87, 123, 224, 238, 243, 303, 326, 352
CviKI_1 RGCY 8 cut(s) 87, 123, 224, 238, 243, 303, 326, 352
DdeI CTNAG 5 cut(s) 38, 83, 168, 234, 251
DpnI GATC 3 cut(s) 193, 205, 249
DpnII GATC 3 cut(s) 191, 203, 247
DriI GACNNNNNGTC 1 cut(s) 393
Eam1105I GACNNNNNGTC 1 cut(s) 393
EciI GGCGGA 1 cut(s) 395
Ecl136II GAGCTC 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 243
Eco24I GRGCYC 2 cut(s) 125, 328
Eco53kI GAGCTC 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 123
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 238
EcoT38I GRGCYC 2 cut(s) 125, 328
Esp3I CGTCTC 1 cut(s) 407
FaqI GGGAC 1 cut(s) 27
FauI CCCGC 1 cut(s) 3
FblI GTMKAC 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 353
FriOI GRGCYC 2 cut(s) 125, 328
Fsp4HI GCNGC 1 cut(s) 353
GlaI GCGC 3 cut(s) 54, 186, 366
GluI GCNGC 1 cut(s) 353
GsaI CCCAGC 1 cut(s) 352
HaeII RGCGCY 1 cut(s) 188
HaeIII GGCC 1 cut(s) 243
HhaI GCGC 3 cut(s) 55, 187, 367
Hin6I GCGC 3 cut(s) 53, 185, 365
HinP1I GCGC 3 cut(s) 53, 185, 365
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HinfI GANTC 5 cut(s) 116, 176, 229, 376, 388
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 5 cut(s) 181, 228, 252, 375, 416
Hpy188III TCNNGA 3 cut(s) 170, 195, 233
Hpy8I GTNNAC 1 cut(s) 96
HpyAV CCTTC 1 cut(s) 170
HpyCH4V TGCA 1 cut(s) 355
HpyF3I CTNAG 5 cut(s) 38, 83, 168, 234, 251
HspAI GCGC 3 cut(s) 53, 185, 365
Kzo9I GATC 3 cut(s) 191, 203, 247
LmnI GCTCC 2 cut(s) 128, 323
LpnPI CCDG 6 cut(s) 126, 155, 225, 246, 252, 362
Lsp1109I GCAGC 1 cut(s) 339
MaeIII GTNAC 2 cut(s) 217, 385
MalI GATC 3 cut(s) 193, 205, 249
MboI GATC 3 cut(s) 191, 203, 247
MboII GAAGA 1 cut(s) 280
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 2 cut(s) 125, 328
MluCI AATT 4 cut(s) 27, 48, 210, 272
MlyI GAGTC 3 cut(s) 110, 370, 382
MmeI TCCRAC 1 cut(s) 301
MseI TTAA 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 352
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
NdeII GATC 3 cut(s) 191, 203, 247
NlaIV GGNNCC 1 cut(s) 325
NmeAIII GCCGAG 1 cut(s) 213
NmuCI GTSAC 1 cut(s) 385
PaeR7I CTCGAG 1 cut(s) 118
PceI AGGCCT 1 cut(s) 243
PfeI GAWTC 2 cut(s) 176, 229
PkrI GCNGC 1 cut(s) 354
PleI GAGTC 3 cut(s) 110, 370, 382
PpsI GAGTC 3 cut(s) 110, 370, 382
Psp124BI GAGCTC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 238
PspFI CCCAGC 1 cut(s) 348
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 325
PspXI VCTCGAGB 1 cut(s) 118
PsuI RGATCY 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 352
SacI GAGCTC 1 cut(s) 125
SalI GTCGAC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 1 cut(s) 353
Sau3AI GATC 3 cut(s) 191, 203, 247
SchI GAGTC 3 cut(s) 110, 370, 382
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 2 cut(s) 125, 328
SetI ASST 6 cut(s) 89, 101, 125, 202, 226, 354
Sfr274I CTCGAG 1 cut(s) 118
SlaI CTCGAG 1 cut(s) 118
SmlI CTYRAG 2 cut(s) 118, 298
SmoI CTYRAG 2 cut(s) 118, 298
Sse9I AATT 4 cut(s) 27, 48, 210, 272
SseBI AGGCCT 1 cut(s) 243
SsiI CCGC 2 cut(s) 10, 406
SstI GAGCTC 1 cut(s) 125
StuI AGGCCT 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 238
TaqI TCGA 5 cut(s) 95, 119, 202, 246, 335
TasI AATT 4 cut(s) 27, 48, 210, 272
TfiI GAWTC 2 cut(s) 176, 229
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 1 cut(s) 352
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 1 cut(s) 152
TspGWI ACGGA 3 cut(s) 373, 381, 389
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 1 cut(s) 27
XhoI CTCGAG 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.