Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8416761.1

Orthogroup ID

OG0024872

Physical Location & Seq

Genomic Coordinates Reverse (-)

195 .. 545

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8416761.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgtcgaaagaagtgaccgaagaaggagaggtgttctctaatggtcagcaacctagggactacagcgaaccggcacgggcaccgctctttgatgccggagagctcagtctctggtccgtttatagagccgtgattgccgagttcagtcttttaacaatgtcaaaagaagtgaccgaagaaggagaggtgttctctaatggtcagcaacctagggactacagcgaaccggcactggcaccgctctttgatgccggagagctcagcctctggtctgtttacagagctgtgattgttgagtccatggccagccttctgtttttgtacatcacagtcgctacagtgataaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

116

Amino Acids

12.89

Weight (kDa)

4.18

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024872)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130761
rosa_multiflora	Rmu_co8416761.1_g000001 Rmu_ssc0000114.1_g000037

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	79, 235
AccBSI	CCGCTC	2 cut(s)	85, 241
AciI	CCGC	2 cut(s)	83, 239
AcoI	YGGCCR	1 cut(s)	303
AfaI	GTAC	1 cut(s)	323
AluBI	AGCT	3 cut(s)	103, 259, 284
AluI	AGCT	3 cut(s)	103, 259, 284
Alw21I	GWGCWC	2 cut(s)	105, 261
Alw26I	GTCTC	1 cut(s)	113
AlwNI	CAGNNNCTG	2 cut(s)	111, 267
AoxI	GGCC	1 cut(s)	303
AspA2I	CCTAGG	2 cut(s)	53, 209
AspS9I	GGNCC	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	114
AvrII	CCTAGG	2 cut(s)	53, 209
BaeGI	GKGCMC	1 cut(s)	82
BalI	TGGCCA	1 cut(s)	305
BanI	GGYRCC	2 cut(s)	79, 235
BanII	GRGCYC	2 cut(s)	105, 261
Bbv12I	GWGCWC	2 cut(s)	105, 261
BceAI	ACGGC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	2 cut(s)	54, 210
BfmI	CTRYAG	3 cut(s)	61, 217, 336
BlnI	CCTAGG	2 cut(s)	53, 209
BlpI	GCTNAGC	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	2 cut(s)	81, 237
BmsI	GCATC	2 cut(s)	82, 238
BplI	GAGNNNNNCTC	4 cut(s)	20, 52, 176, 208
Bpu1102I	GCTNAGC	1 cut(s)	260
BsaJI	CCNNGG	3 cut(s)	53, 209, 300
Bse118I	RCCGGY	2 cut(s)	70, 226
Bse1I	ACTGG	1 cut(s)	237
BseDI	CCNNGG	3 cut(s)	53, 209, 300
BseMII	CTCAG	2 cut(s)	118, 274
BseNI	ACTGG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	82
BshFI	GGCC	1 cut(s)	305
BshNI	GGYRCC	2 cut(s)	79, 235
BsiHKAI	GWGCWC	2 cut(s)	105, 261
BsiSI	CCGG	4 cut(s)	71, 96, 227, 252
BslFI	GGGAC	2 cut(s)	71, 227
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	2 cut(s)	71, 227
BsnI	GGCC	1 cut(s)	305
Bsp1286I	GDGCHC	3 cut(s)	82, 105, 261
Bsp1407I	TGTACA	1 cut(s)	321
Bsp1720I	GCTNAGC	1 cut(s)	260
Bsp19I	CCATGG	1 cut(s)	300
BspACI	CCGC	2 cut(s)	83, 239
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	2 cut(s)	117, 273
BspLI	GGNNCC	2 cut(s)	81, 237
BspT107I	GGYRCC	2 cut(s)	79, 235
BsrBI	CCGCTC	2 cut(s)	85, 241
BsrFI	RCCGGY	2 cut(s)	70, 226
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	237
BssAI	RCCGGY	2 cut(s)	70, 226
BssECI	CCNNGG	3 cut(s)	53, 209, 300
BssT1I	CCWWGG	3 cut(s)	53, 209, 300
Bst4CI	ACNGT	2 cut(s)	331, 340
BstAUI	TGTACA	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	104, 260
BstDSI	CCRYGG	1 cut(s)	300
BstMAI	GTCTC	1 cut(s)	113
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstSFI	CTRYAG	3 cut(s)	61, 217, 336
BstSLI	GKGCMC	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	305
BtgI	CCRYGG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	230, 345
Cac8I	GCNNGC	1 cut(s)	307
CaiI	CAGNNNCTG	2 cut(s)	111, 267
Cfr10I	RCCGGY	2 cut(s)	70, 226
Cfr13I	GGNCC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	7 cut(s)	103, 128, 259, 264, 284, 305, 309
CviKI_1	RGCY	7 cut(s)	103, 128, 259, 264, 284, 305, 309
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	2 cut(s)	104, 260
EaeI	YGGCCR	1 cut(s)	303
Ecl136II	GAGCTC	2 cut(s)	103, 259
Eco130I	CCWWGG	3 cut(s)	53, 209, 300
Eco24I	GRGCYC	2 cut(s)	105, 261
Eco47I	GGWCC	1 cut(s)	114
Eco53kI	GAGCTC	2 cut(s)	103, 259
EcoICRI	GAGCTC	2 cut(s)	103, 259
EcoT14I	CCWWGG	3 cut(s)	53, 209, 300
EcoT38I	GRGCYC	2 cut(s)	105, 261
ErhI	CCWWGG	3 cut(s)	53, 209, 300
FaeI	CATG	1 cut(s)	304
FaiI	YATR	2 cut(s)	123, 302
FaqI	GGGAC	2 cut(s)	71, 227
FatI	CATG	1 cut(s)	300
FriOI	GRGCYC	2 cut(s)	105, 261
FspBI	CTAG	2 cut(s)	54, 210
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	4 cut(s)	71, 96, 227, 252
Hin1II	CATG	1 cut(s)	304
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	4 cut(s)	71, 96, 227, 252
Hpy166II	GTNNAC	1 cut(s)	277
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	3 cut(s)	17, 173, 320
HpyCH4III	ACNGT	2 cut(s)	331, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	2 cut(s)	104, 260
Hsp92II	CATG	1 cut(s)	304
LpnPI	CCDG	8 cut(s)	84, 97, 109, 218, 240, 253, 265, 319
LweI	GCATC	2 cut(s)	82, 238
MaeI	CTAG	2 cut(s)	54, 210
MaeIII	GTNAC	2 cut(s)	13, 169
MbiI	CCGCTC	2 cut(s)	85, 241
MboII	GAAGA	2 cut(s)	32, 188
MhlI	GDGCHC	3 cut(s)	82, 105, 261
MlsI	TGGCCA	1 cut(s)	305
MluNI	TGGCCA	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	3 cut(s)	22, 178, 275
Mox20I	TGGCCA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	305
MspI	CCGG	4 cut(s)	71, 96, 227, 252
MwoI	GCNNNNNNNGC	1 cut(s)	134
NcoI	CCATGG	1 cut(s)	300
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	2 cut(s)	81, 237
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	2 cut(s)	13, 169
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp124BI	GAGCTC	2 cut(s)	105, 261
PspN4I	GGNNCC	2 cut(s)	81, 237
PspPI	GGNCC	1 cut(s)	114
PstNI	CAGNNNCTG	2 cut(s)	111, 267
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SacI	GAGCTC	2 cut(s)	105, 261
SaqAI	TTAA	1 cut(s)	152
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	305
SduI	GDGCHC	3 cut(s)	82, 105, 261
SetI	ASST	7 cut(s)	33, 55, 105, 189, 211, 261, 286
SfaNI	GCATC	2 cut(s)	82, 238
SfcI	CTRYAG	3 cut(s)	61, 217, 336
SinI	GGWCC	1 cut(s)	114
SsiI	CCGC	2 cut(s)	83, 239
SspMI	CTAG	2 cut(s)	54, 210
SstI	GAGCTC	2 cut(s)	105, 261
StyI	CCWWGG	3 cut(s)	53, 209, 300
TaaI	ACNGT	2 cut(s)	331, 340
TaqI	TCGA	1 cut(s)	5
TaqII	GACCGA	2 cut(s)	32, 188
TatI	WGTACW	1 cut(s)	321
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TscAI	CASTG	2 cut(s)	237, 345
TseFI	GTSAC	2 cut(s)	13, 169
Tsp45I	GTSAC	2 cut(s)	13, 169
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	2 cut(s)	237, 345
VpaK11BI	GGWCC	1 cut(s)	114
XmaJI	CCTAGG	2 cut(s)	53, 209
XspI	CTAG	2 cut(s)	54, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.