RchiOBHm_Chr2g0132221

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029736
Physical Location & Seq
Reverse (-)
48647170 .. 48647498
329 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50350

Sequence Viewer

Length: 300 bp
ATGGCCTCCATATCCACCAAAACCAAGGTGGTGCCTGCAGTCATAGTCGGCGCCGGAAGGGTTGGGAAGGCCTTAAATGACATGGGCAATGGTGATGACTTGCTGGTCAAAAGAGGAGAGCCTATGCCTCTTGACTTTGAAGGCCCATTAATGGTTTGTACTAGAAATGATGATGTCAAGGCAGTTCTTGAGTCTACTCCAAGGCCCAGATGGAACAGTAAGACCATCTCTATCTCATTACACACACATTTTAATTTGCCAACAAAGATTATAGACTGGGTTGATTGGTTAGCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.85

Weight (kDa)

7.92

Isoelectric Point (pI)

25.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029736)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0132221
rosa_multiflora Rmu_co8360591.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AccB1I GGYRCC 2 cut(s) 31, 50
AccI GTMKAC 1 cut(s) 194
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 1 cut(s) 140
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
AoxI GGCC 4 cut(s) 3, 69, 142, 203
AseI ATTAAT 1 cut(s) 149
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 2 cut(s) 143, 204
AsuHPI GGTGA 1 cut(s) 104
BanI GGYRCC 2 cut(s) 31, 50
BccI CCATC 2 cut(s) 204, 233
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 54
BmgT120I GGNCC 2 cut(s) 143, 204
BmiI GGNNCC 2 cut(s) 33, 52
BmrI ACTGGG 1 cut(s) 286
BmuI ACTGGG 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 24, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 281
Bse3DI GCAATG 1 cut(s) 94
BseDI CCNNGG 2 cut(s) 24, 200
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 281
BseRI GAGGAG 1 cut(s) 129
BshFI GGCC 4 cut(s) 5, 71, 144, 205
BshNI GGYRCC 2 cut(s) 31, 50
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 151
BsnI GGCC 4 cut(s) 5, 71, 144, 205
BspANI GGCC 4 cut(s) 5, 71, 144, 205
BspLI GGNNCC 2 cut(s) 33, 52
BspMAI CTGCAG 1 cut(s) 40
BspT107I GGYRCC 2 cut(s) 31, 50
BsrDI GCAATG 1 cut(s) 94
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 24, 200
BssNI GRCGYC 1 cut(s) 51
BssT1I CCWWGG 2 cut(s) 24, 200
Bst4CI ACNGT 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 36
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstSFI CTRYAG 1 cut(s) 36
BsuRI GGCC 4 cut(s) 5, 71, 144, 205
Cac8I GCNNGC 1 cut(s) 36
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 143, 204
Csp6I GTAC 1 cut(s) 159
CviAII CATG 1 cut(s) 82
CviJI RGCY 6 cut(s) 5, 71, 121, 144, 205, 293
CviKI_1 RGCY 6 cut(s) 5, 71, 121, 144, 205, 293
CviQI GTAC 1 cut(s) 159
DinI GGCGCC 1 cut(s) 52
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
Eco130I CCWWGG 2 cut(s) 24, 200
Eco147I AGGCCT 1 cut(s) 71
EcoT14I CCWWGG 2 cut(s) 24, 200
EgeI GGCGCC 1 cut(s) 52
EheI GGCGCC 1 cut(s) 52
ErhI CCWWGG 2 cut(s) 24, 200
FaeI CATG 1 cut(s) 85
FaiI YATR 5 cut(s) 11, 44, 83, 125, 272
FatI CATG 1 cut(s) 81
FblI GTMKAC 1 cut(s) 194
FspBI CTAG 1 cut(s) 162
GlaI GCGC 1 cut(s) 52
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 4 cut(s) 5, 71, 144, 205
HapII CCGG 1 cut(s) 54
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 1 cut(s) 85
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 1 cut(s) 191
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 195
Hpy188III TCNNGA 2 cut(s) 131, 188
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 3 cut(s) 51, 61, 134
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4V TGCA 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 1 cut(s) 85
HspAI GCGC 1 cut(s) 51
KasI GGCGCC 1 cut(s) 50
LpnPI CCDG 5 cut(s) 48, 67, 89, 220, 262
MaeI CTAG 1 cut(s) 162
MluCI AATT 1 cut(s) 253
Mly113I GGCGCC 1 cut(s) 51
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 3 cut(s) 16, 107, 138
MseI TTAA 3 cut(s) 74, 149, 252
MspI CCGG 1 cut(s) 54
NarI GGCGCC 1 cut(s) 51
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 2 cut(s) 33, 52
PceI AGGCCT 1 cut(s) 71
PleI GAGTC 1 cut(s) 199
PluTI GGCGCC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 199
PshBI ATTAAT 1 cut(s) 149
PspN4I GGNNCC 2 cut(s) 33, 52
PspPI GGNCC 2 cut(s) 143, 204
PstI CTGCAG 1 cut(s) 40
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SaqAI TTAA 3 cut(s) 74, 149, 252
Sau96I GGNCC 2 cut(s) 143, 204
SchI GAGTC 1 cut(s) 200
SetI ASST 2 cut(s) 30, 295
SfcI CTRYAG 1 cut(s) 36
SfoI GGCGCC 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 1 cut(s) 253
SseBI AGGCCT 1 cut(s) 71
SspDI GGCGCC 1 cut(s) 50
SspMI CTAG 1 cut(s) 162
StuI AGGCCT 1 cut(s) 71
StyI CCWWGG 2 cut(s) 24, 200
TaaI ACNGT 1 cut(s) 218
TasI AATT 1 cut(s) 253
TatI WGTACW 1 cut(s) 158
Tru1I TTAA 3 cut(s) 74, 149, 252
Tru9I TTAA 3 cut(s) 74, 149, 252
VspI ATTAAT 1 cut(s) 149
XcmI CCANNNNNNNNNTGG 2 cut(s) 25, 207
XmiI GTMKAC 1 cut(s) 194
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.