Rmu_co8360591.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8360591.1
OG0029736
Physical Location & Seq
Reverse (-)
1 .. 1071
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8360591.1_g000001.1.cds

Sequence Viewer

Length: 328 bp
atggccaacatgacactcacactctctagttccactctcttccgcctcacaacaaaacccacttcgagactctctctaacaatcagagccaaagcctccacagccactgccatgacctccatatccaccaaaaccaaggtggtgcctgcagtcatagtcggcgccgaaagggttgggaaggccttaaatgacatgggcaatggtgctgacttgctggtcaaaagaggagagcctgtgcctcttgactttgaaggcccaataatggtttgtactagaaatgatgatctcgaggctgtttttgagtccactccaaggcccagatggaacg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.74

Weight (kDa)

9.74

Isoelectric Point (pI)

28.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029736)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0132221
rosa_multiflora Rmu_co8360591.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AccB1I GGYRCC 2 cut(s) 142, 161
AciI CCGC 1 cut(s) 43
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 2 cut(s) 262, 312
AgsI TTSAA 1 cut(s) 251
Alw26I GTCTC 1 cut(s) 61
AlwNI CAGNNNCTG 1 cut(s) 107
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 4 cut(s) 3, 180, 253, 314
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 254, 315
AvaI CYCGRG 1 cut(s) 287
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 142, 161
BccI CCATC 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 2 cut(s) 27, 273
BfmI CTRYAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 2 cut(s) 254, 315
BmiI GGNNCC 2 cut(s) 144, 163
BplI GAGNNNNNCTC 2 cut(s) 58, 90
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 135, 311
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 312
Bse3DI GCAATG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 135, 311
BseLI CCNNNNNNNGG 2 cut(s) 262, 312
BseMI GCAATG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 240
BshFI GGCC 4 cut(s) 5, 182, 255, 316
BshNI GGYRCC 2 cut(s) 142, 161
BsiHKCI CYCGRG 1 cut(s) 287
BslI CCNNNNNNNGG 2 cut(s) 262, 312
BsmAI GTCTC 1 cut(s) 61
BsnI GGCC 4 cut(s) 5, 182, 255, 316
BsoBI CYCGRG 1 cut(s) 287
Bsp143I GATC 1 cut(s) 283
BspACI CCGC 1 cut(s) 43
BspANI GGCC 4 cut(s) 5, 182, 255, 316
BspLI GGNNCC 2 cut(s) 144, 163
BspMAI CTGCAG 1 cut(s) 151
BspT107I GGYRCC 2 cut(s) 142, 161
BsrDI GCAATG 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 135, 311
BssMI GATC 1 cut(s) 283
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 2 cut(s) 135, 311
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 147
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 147
BsuRI GGCC 4 cut(s) 5, 182, 255, 316
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 147
CaiI CAGNNNCTG 1 cut(s) 107
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 2 cut(s) 254, 315
Csp6I GTAC 1 cut(s) 270
CviAII CATG 3 cut(s) 10, 112, 193
CviJI RGCY 9 cut(s) 5, 89, 95, 104, 182, 232, 255, 293, 316
CviKI_1 RGCY 9 cut(s) 5, 89, 95, 104, 182, 232, 255, 293, 316
CviQI GTAC 1 cut(s) 270
DinI GGCGCC 1 cut(s) 163
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
EciI GGCGGA 1 cut(s) 32
Eco130I CCWWGG 2 cut(s) 135, 311
Eco147I AGGCCT 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 287
EcoT14I CCWWGG 2 cut(s) 135, 311
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
ErhI CCWWGG 2 cut(s) 135, 311
FaeI CATG 3 cut(s) 13, 115, 196
FaiI YATR 5 cut(s) 11, 113, 122, 155, 194
FatI CATG 3 cut(s) 9, 111, 192
FspBI CTAG 2 cut(s) 27, 273
GlaI GCGC 1 cut(s) 163
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 4 cut(s) 5, 182, 255, 316
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 3 cut(s) 13, 115, 196
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HinfI GANTC 2 cut(s) 69, 302
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 3 cut(s) 66, 242, 287
Hpy8I GTNNAC 1 cut(s) 306
HpyAV CCTTC 2 cut(s) 172, 245
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 3 cut(s) 13, 115, 196
HspAI GCGC 1 cut(s) 162
KasI GGCGCC 1 cut(s) 161
Kzo9I GATC 1 cut(s) 283
LpnPI CCDG 3 cut(s) 159, 200, 246
MaeI CTAG 2 cut(s) 27, 273
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 1 cut(s) 31
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 162
MlyI GAGTC 2 cut(s) 63, 311
MnlI CCTC 6 cut(s) 56, 106, 127, 218, 249, 283
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 101
NarI GGCGCC 1 cut(s) 162
NdeII GATC 1 cut(s) 283
NlaIII CATG 3 cut(s) 13, 115, 196
NlaIV GGNNCC 2 cut(s) 144, 163
PaeR7I CTCGAG 1 cut(s) 287
PceI AGGCCT 1 cut(s) 182
PleI GAGTC 2 cut(s) 63, 310
PluTI GGCGCC 1 cut(s) 165
PpsI GAGTC 2 cut(s) 63, 310
PspN4I GGNNCC 2 cut(s) 144, 163
PspPI GGNCC 2 cut(s) 254, 315
PstI CTGCAG 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 107
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 1 cut(s) 185
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 2 cut(s) 254, 315
SchI GAGTC 2 cut(s) 63, 311
SetI ASST 2 cut(s) 119, 141
SfcI CTRYAG 1 cut(s) 147
SfoI GGCGCC 1 cut(s) 163
Sfr274I CTCGAG 1 cut(s) 287
SlaI CTCGAG 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
SseBI AGGCCT 1 cut(s) 182
SsiI CCGC 1 cut(s) 43
SspDI GGCGCC 1 cut(s) 161
SspMI CTAG 2 cut(s) 27, 273
StuI AGGCCT 1 cut(s) 182
StyI CCWWGG 2 cut(s) 135, 311
TaqI TCGA 2 cut(s) 65, 288
TatI WGTACW 1 cut(s) 269
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 1 cut(s) 112
TspRI CASTG 1 cut(s) 112
XcmI CCANNNNNNNNNTGG 2 cut(s) 136, 318
XhoI CTCGAG 1 cut(s) 287
XspI CTAG 2 cut(s) 27, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.