Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024826

Physical Location & Seq

Genomic Coordinates Reverse (-)

51223789 .. 51227864

Gene Structure 4076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50527

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAAGGTAGTAACATTTAGCTTAGGTGATTCTGTTGGAGTTTTATTTTCGTTACTTTTGCTTCTCACTAGTGATATGGATTCTGTTGTAAAAGGTAAGGGCTATGAATATGCAACTTTGTATTTTGAGTTTATAGCTTTTTATAAATGCTTGTCTGAGGTGGTAATTATCTTTTTCTGTTCTTCATTATCAGCTGGTGTCCCCGATGATGGAAAAGATTGGCCTCCATTCTTTCGAATTATTCACCATGATATTACCAATGAAATTCCTGTTCCAAATATTTTTCCTTGCAATCATCTATGCTTTACTTGGAATACCACTCTCATATGTGCTGTGGTACAGGACCCTTTATCGGGCAATTCTACATATACTAAATGTGGATTCACTGTTCATCCCTGTTCATCACTGTTCATAGGACAGTGGAGTGACTGTTTTGCCCTCTCTGTTTTTCTCCTCAGTACGGGCTGCCATTTTTCTTGGGCCTTCTTGGTCGATCCTCCACGGCTGTTCACTGAACAAGATTCTAAGAATAAGGGAGAGTACGATATTGGAATACAGAGGAGAGGAGACGAAGGCAATAGAAGATGCTACAATATTGAAATAGAAAGAACTAAAGAAGAAGATGGGAAGTTGGAATGGGATGAGCACGAACAAGGTGATACTCAGTTGTTGGATTTTGATCTAAGGAAGAAAAGCGCGAATCTGGGCATTTGGTTTTCGTTTTTTTTTTTTTGGTTAATTGGTAATCTCTTTATTCAAAGCACGATCTACTGCATGAATGGATCTTCTTCTCTGAATTTCTTGACTGCCAATTCTAATCCCCTTAACGGAGTGGCAGCGGCTATGTGGCTTATGCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCAMP

Protein Analysis

287

Amino Acids

32.57

Weight (kDa)

4.94

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024826)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0134231 RchiOBHm_Chr6g0289531
rosa_samantha	Rh6CG328900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	144
AccII	CGCG	1 cut(s)	698
AciI	CCGC	1 cut(s)	839
AclWI	GGATC	2 cut(s)	488, 790
AcsI	RAATTY	2 cut(s)	264, 796
AfaI	GTAC	3 cut(s)	339, 460, 542
AfiI	CCNNNNNNNGG	5 cut(s)	209, 352, 353, 460, 827
AgsI	TTSAA	2 cut(s)	599, 758
AhlI	ACTAGT	1 cut(s)	68
AloI	GAACNNNNNNTCC	2 cut(s)	372, 404
AluBI	AGCT	3 cut(s)	21, 137, 194
AluI	AGCT	3 cut(s)	21, 137, 194
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	1 cut(s)	561
AlwI	GGATC	2 cut(s)	488, 790
AoxI	GGCC	2 cut(s)	221, 480
ApeKI	GCWGC	2 cut(s)	465, 836
ApoI	RAATTY	2 cut(s)	264, 796
AspLEI	GCGC	1 cut(s)	698
AspS9I	GGNCC	2 cut(s)	343, 480
AsuHPI	GGTGA	3 cut(s)	38, 236, 668
AsuII	TTCGAA	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	2 cut(s)	452, 848
BccI	CCATC	2 cut(s)	203, 617
BceAI	ACGGC	1 cut(s)	518
BcoDI	GTCTC	1 cut(s)	561
BcuI	ACTAGT	1 cut(s)	68
BfaI	CTAG	1 cut(s)	69
BisI	GCNGC	3 cut(s)	466, 837, 840
BlsI	GCNGC	3 cut(s)	467, 838, 841
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	2 cut(s)	343, 480
BmiI	GGNNCC	1 cut(s)	345
BmsI	GCATC	1 cut(s)	575
Bpu10I	CCTNAGC	1 cut(s)	22
Bpu14I	TTCGAA	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	842
BsaBI	GATNNNNATC	1 cut(s)	678
BsaJI	CCNNGG	1 cut(s)	500
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	5 cut(s)	209, 352, 353, 460, 827
Bse8I	GATNNNNATC	1 cut(s)	678
BseDI	CCNNGG	1 cut(s)	500
BseGI	GGATG	2 cut(s)	391, 646
BseJI	GATNNNNATC	1 cut(s)	678
BseLI	CCNNNNNNNGG	5 cut(s)	209, 352, 353, 460, 827
BseMII	CTCAG	3 cut(s)	147, 469, 677
BseRI	GAGGAG	3 cut(s)	443, 574, 579
BseXI	GCAGC	2 cut(s)	452, 848
Bsh1236I	CGCG	1 cut(s)	698
BshFI	GGCC	2 cut(s)	223, 482
BsiHKAI	GWGCWC	1 cut(s)	648
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	5 cut(s)	209, 352, 353, 460, 827
BsmAI	GTCTC	1 cut(s)	561
BsmBI	CGTCTC	1 cut(s)	561
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	223, 482
Bsp119I	TTCGAA	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	648
Bsp143I	GATC	4 cut(s)	493, 679, 765, 782
BspACI	CCGC	1 cut(s)	839
BspANI	GGCC	2 cut(s)	223, 482
BspCNI	CTCAG	3 cut(s)	148, 468, 676
BspFNI	CGCG	1 cut(s)	698
BspLI	GGNNCC	1 cut(s)	345
BspPI	GGATC	2 cut(s)	488, 790
BspT104I	TTCGAA	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	500
BssMI	GATC	4 cut(s)	493, 679, 765, 782
Bst4CI	ACNGT	4 cut(s)	388, 408, 420, 431
BstBI	TTCGAA	1 cut(s)	235
BstDEI	CTNAG	6 cut(s)	22, 156, 455, 525, 663, 683
BstDSI	CCRYGG	1 cut(s)	500
BstF5I	GGATG	2 cut(s)	391, 646
BstFNI	CGCG	1 cut(s)	698
BstHHI	GCGC	1 cut(s)	698
BstKTI	GATC	4 cut(s)	496, 682, 768, 785
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	4 cut(s)	493, 679, 765, 782
BstUI	CGCG	1 cut(s)	698
BstV1I	GCAGC	2 cut(s)	452, 848
BstX2I	RGATCY	1 cut(s)	782
BstYI	RGATCY	1 cut(s)	782
BsuRI	GGCC	2 cut(s)	223, 482
BtgI	CCRYGG	1 cut(s)	500
BtsCI	GGATG	2 cut(s)	391, 646
BtsIMutI	CAGTG	4 cut(s)	384, 404, 425, 510
CfoI	GCGC	1 cut(s)	698
Cfr13I	GGNCC	2 cut(s)	343, 480
Csp6I	GTAC	3 cut(s)	338, 459, 541
CviAII	CATG	2 cut(s)	248, 775
CviQI	GTAC	3 cut(s)	338, 459, 541
DdeI	CTNAG	6 cut(s)	22, 156, 455, 525, 663, 683
DpnI	GATC	4 cut(s)	495, 681, 767, 784
DpnII	GATC	4 cut(s)	493, 679, 765, 782
Eco47I	GGWCC	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	561
FaeI	CATG	2 cut(s)	251, 778
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	2 cut(s)	247, 774
FauNDI	CATATG	1 cut(s)	326
Fnu4HI	GCNGC	3 cut(s)	466, 837, 840
FokI	GGATG	2 cut(s)	378, 653
Fsp4HI	GCNGC	3 cut(s)	466, 837, 840
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	697
GluI	GCNGC	3 cut(s)	466, 837, 840
HaeIII	GGCC	2 cut(s)	223, 482
HhaI	GCGC	1 cut(s)	698
Hin1II	CATG	2 cut(s)	251, 778
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HinfI	GANTC	5 cut(s)	29, 80, 381, 521, 700
HphI	GGTGA	3 cut(s)	38, 236, 668
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	2 cut(s)	157, 795
Hpy188III	TCNNGA	1 cut(s)	802
Hpy8I	GTNNAC	1 cut(s)	510
HpyAV	CCTTC	2 cut(s)	493, 566
HpyCH4III	ACNGT	4 cut(s)	388, 408, 420, 431
HpyCH4V	TGCA	3 cut(s)	113, 291, 774
HpyF3I	CTNAG	6 cut(s)	22, 156, 455, 525, 663, 683
Hsp92II	CATG	2 cut(s)	251, 778
HspAI	GCGC	1 cut(s)	696
Kzo9I	GATC	4 cut(s)	493, 679, 765, 782
LpnPI	CCDG	5 cut(s)	180, 282, 326, 409, 689
Lsp1109I	GCAGC	2 cut(s)	452, 848
LweI	GCATC	1 cut(s)	575
MaeI	CTAG	1 cut(s)	69
MaeIII	GTNAC	3 cut(s)	10, 51, 425
MalI	GATC	4 cut(s)	495, 681, 767, 784
MboI	GATC	4 cut(s)	493, 679, 765, 782
MboII	GAAGA	7 cut(s)	174, 594, 629, 632, 700, 777, 780
MflI	RGATCY	1 cut(s)	782
MhlI	GDGCHC	1 cut(s)	648
MluCI	AATT	7 cut(s)	165, 237, 264, 358, 738, 796, 811
MmeI	TCCRAC	3 cut(s)	16, 612, 651
MnlI	CCTC	7 cut(s)	151, 234, 449, 464, 507, 552, 557
MseI	TTAA	2 cut(s)	737, 825
MspA1I	CMGCKG	2 cut(s)	194, 839
MvnI	CGCG	1 cut(s)	698
NdeI	CATATG	1 cut(s)	326
NdeII	GATC	4 cut(s)	493, 679, 765, 782
NlaIII	CATG	2 cut(s)	251, 778
NlaIV	GGNNCC	1 cut(s)	345
NmuCI	GTSAC	1 cut(s)	425
NspV	TTCGAA	1 cut(s)	235
PfeI	GAWTC	5 cut(s)	29, 80, 381, 521, 700
PkrI	GCNGC	3 cut(s)	467, 838, 841
PpuMI	RGGWCCY	1 cut(s)	343
PsiI	TTATAA	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	2 cut(s)	343, 480
PspPPI	RGGWCCY	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	782
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	3 cut(s)	339, 460, 542
RsaNI	GTAC	3 cut(s)	338, 459, 541
SaqAI	TTAA	2 cut(s)	737, 825
SatI	GCNGC	3 cut(s)	466, 837, 840
Sau3AI	GATC	4 cut(s)	493, 679, 765, 782
Sau96I	GGNCC	2 cut(s)	343, 480
SduI	GDGCHC	1 cut(s)	648
SetI	ASST	8 cut(s)	9, 23, 28, 97, 139, 162, 196, 658
SfaNI	GCATC	1 cut(s)	575
SfuI	TTCGAA	1 cut(s)	235
SinI	GGWCC	1 cut(s)	343
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
SpeI	ACTAGT	1 cut(s)	68
Sse9I	AATT	7 cut(s)	165, 237, 264, 358, 738, 796, 811
SsiI	CCGC	1 cut(s)	839
SspI	AATATT	2 cut(s)	280, 595
SspMI	CTAG	1 cut(s)	69
TaaI	ACNGT	4 cut(s)	388, 408, 420, 431
TaqI	TCGA	2 cut(s)	235, 492
TasI	AATT	7 cut(s)	165, 237, 264, 358, 738, 796, 811
TauI	GCSGC	1 cut(s)	842
TfiI	GAWTC	5 cut(s)	29, 80, 381, 521, 700
Tru1I	TTAA	2 cut(s)	737, 825
Tru9I	TTAA	2 cut(s)	737, 825
TscAI	CASTG	4 cut(s)	391, 411, 425, 517
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	2 cut(s)	465, 836
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	8 cut(s)	17, 120, 174, 276, 380, 390, 400, 791
TspGWI	ACGGA	1 cut(s)	843
TspRI	CASTG	4 cut(s)	391, 411, 425, 517
VpaK11BI	GGWCC	1 cut(s)	343
XapI	RAATTY	2 cut(s)	264, 796
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.