Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029759

Physical Location & Seq

Genomic Coordinates Forward (+)

66530357 .. 66533262

Gene Structure 2906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51828

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGCCCTCTTGGGGAAAGACTTGGCTTTCGATACTTGGTTTGTTTGATTGGTCTGGAAGCAACCCTATGCCCCCAGAGTTTTGGATTCTTCCTTCATTTCTTCCTATGCATCCAGCAAAAATGTGGTGCTATTGTAGGATGGTTTACATGCCAATGTCATACTTATATGGAAAAAGGTTTGTTGGCCCAATTACACCTCTCGTTCTTCAATTGAGGGAAGAACTTTTTATTCAACCTTACAATGAAATCAATTGGAAGAAAGTACGCCATCTATGTGCCAAAGCTCTTCAAGTGACGATGAAGCATATTCATTACGAAGATGAGAACAGCCGATACATCACCATAGGATGTGTGGAAAAGGTAATGTGTATGGTTTTAGGTATGCTTCCTTGTTGGGCTGAAGATCCAAATGGGGACTATTTCAAGAAGCATCTTGCAAGGATCCCGGATTATTTATGGGTTGCTGAAGATAGGATGAAGATGCAAAGTTTTGGCAGTCAGCAGTGGGACACTGGTTTTGCCATTCAAGCTTTGCTTGCTAGTAATCTCACAGATGAAATTGGGCCAACGTCAAGGACATCTGGTGACTTCAAAAGCATGCACCGCCACATTTCTAAAGGATCATGGACTTTCTCTGATCAAGATCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGTGTTGCCTTCTGTTGTCGATGATGCCACTGGAGATAGTTGGAGAAAAAATGGAACCTGAGCGCTTGTACGATTCTGTCAATGTTCTACTTTCGCTACAGCTGTTAAATCCGACAGAATTCTTCGCGGACATTGTGATTGAGCATGAATACGTTGAGTGCACTTCATCTGCAATACAGGCGTTAGTTCTGTTTAAAAAGCTAAACCCTGGCCACAGGAAGAAAGAGATCGAACATTCCATCACCAATGCTGTACACTACCTTGAAAATATACAAATGCCGGATGGAGGATCGGCAGCTGCTGGCAAGACTTTCAGAACTAGTGAGGCCATGCGCAATGGGGTTAGTTTTCTACTTACGGCGCAGAGAGAGAACGGCGGTTGGGGAGAGAGCTATCTTTCACGTCCACAAAAGAAATACATTCCTCTAGAAGGAAACCGATCCAATTTAGTACATACTGCTTGGGCTATGATGGGTTTCATTCATGCGGGACAGGCAGAAAGAGACCCAACACCTCTTCATCGTGCAGCAAAGTTTATAATCAATTCTGAACTGGAAAATAGTGATTTTCCCCAGCAGGTATCTATCTATCTTTACATAACAAAACTTGCATCCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

434

Amino Acids

49.67

Weight (kDa)

6.44

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_N	PF13249	3 - 87	2.8e-13	Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C	PF13243	334 - 411	4.4e-07	Squalene-hopene cyclase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029759)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148761 RchiOBHm_Chr2g0148891

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1223
Acc16I	TGCGCA	1 cut(s)	1019
Acc36I	ACCTGC	1 cut(s)	1252
AccII	CGCG	1 cut(s)	812
AciI	CCGC	4 cut(s)	604, 812, 1062, 1172
AclWI	GGATC	6 cut(s)	398, 436, 449, 628, 982, 1119
AcoI	YGGCCR	1 cut(s)	895
AcsI	RAATTY	1 cut(s)	803
AcuI	CTGAAG	2 cut(s)	420, 486
AfaI	GTAC	4 cut(s)	264, 755, 939, 1137
AfeI	AGCGCT	1 cut(s)	749
AfiI	CCNNNNNNNGG	3 cut(s)	11, 971, 1115
AgsI	TTSAA	7 cut(s)	209, 233, 290, 424, 527, 592, 950
AhlI	ACTAGT	1 cut(s)	1004
AjiI	CACGTC	1 cut(s)	1088
AjnI	CCWGG	1 cut(s)	892
AluBI	AGCT	6 cut(s)	284, 530, 787, 886, 983, 1077
AluI	AGCT	6 cut(s)	284, 530, 787, 886, 983, 1077
Alw21I	GWGCWC	1 cut(s)	848
Alw26I	GTCTC	1 cut(s)	1182
Alw44I	GTGCAC	1 cut(s)	844
AlwI	GGATC	6 cut(s)	398, 436, 449, 628, 982, 1119
AlwNI	CAGNNNCTG	1 cut(s)	986
Aor51HI	AGCGCT	1 cut(s)	749
AoxI	GGCC	4 cut(s)	184, 563, 895, 1011
ApaLI	GTGCAC	1 cut(s)	844
ApeKI	GCWGC	3 cut(s)	980, 983, 1211
ApoI	RAATTY	1 cut(s)	803
ArsI	GACNNNNNNTTYG	4 cut(s)	10, 42, 500, 532
AspLEI	GCGC	3 cut(s)	750, 1020, 1048
AspS9I	GGNCC	2 cut(s)	185, 563
AsuC2I	CCSGG	1 cut(s)	446
AsuHPI	GGTGA	3 cut(s)	331, 596, 919
BaeGI	GKGCMC	1 cut(s)	848
BalI	TGGCCA	1 cut(s)	897
BamHI	GGATCC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	848
BbvI	GCAGC	3 cut(s)	970, 992, 1223
BccI	CCATC	6 cut(s)	133, 276, 645, 932, 962, 1150
BceAI	ACGGC	2 cut(s)	1059, 1075
BciT130I	CCWGG	1 cut(s)	894
BclI	TGATCA	1 cut(s)	637
BcnI	CCSGG	1 cut(s)	446
BcoDI	GTCTC	1 cut(s)	1182
BcuI	ACTAGT	1 cut(s)	1004
BfaI	CTAG	3 cut(s)	540, 1005, 1112
BfmI	CTRYAG	2 cut(s)	672, 782
BfoI	RGCGCY	1 cut(s)	751
BfuAI	ACCTGC	1 cut(s)	1252
BisI	GCNGC	3 cut(s)	981, 984, 1212
BlsI	GCNGC	3 cut(s)	982, 985, 1213
Bme1390I	CCNGG	2 cut(s)	446, 894
BmgBI	CACGTC	1 cut(s)	1088
BmgT120I	GGNCC	2 cut(s)	185, 563
BmiI	GGNNCC	2 cut(s)	443, 741
BmrFI	CCNGG	2 cut(s)	446, 894
BmsI	GCATC	4 cut(s)	118, 439, 471, 699
BpmI	CTGGAG	1 cut(s)	737
Bpu10I	CCTNAGC	1 cut(s)	744
BpuMI	CCSGG	1 cut(s)	446
BsaBI	GATNNNNATC	1 cut(s)	642
BsaI	GGTCTC	1 cut(s)	1182
BsaJI	CCNNGG	1 cut(s)	892
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 971, 1115
Bse1I	ACTGG	3 cut(s)	517, 720, 1242
Bse3DI	GCAATG	1 cut(s)	1027
Bse8I	GATNNNNATC	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	894
BseDI	CCNNGG	1 cut(s)	892
BseGI	GGATG	7 cut(s)	109, 144, 353, 480, 656, 973, 1295
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	3 cut(s)	11, 971, 1115
BseMI	GCAATG	1 cut(s)	1027
BseMII	CTCAG	1 cut(s)	735
BseNI	ACTGG	3 cut(s)	517, 720, 1242
BseSI	GKGCMC	1 cut(s)	848
BseXI	GCAGC	3 cut(s)	970, 992, 1223
BseYI	CCCAGC	1 cut(s)	1257
BsgI	GTGCAG	1 cut(s)	1230
Bsh1236I	CGCG	1 cut(s)	812
BshFI	GGCC	4 cut(s)	186, 565, 897, 1013
BsiHKAI	GWGCWC	1 cut(s)	848
BsiSI	CCGG	2 cut(s)	446, 965
BslFI	GGGAC	3 cut(s)	428, 521, 1188
BslI	CCNNNNNNNGG	3 cut(s)	11, 971, 1115
BsmAI	GTCTC	1 cut(s)	1182
BsmFI	GGGAC	3 cut(s)	428, 521, 1188
BsnI	GGCC	4 cut(s)	186, 565, 897, 1013
Bso31I	GGTCTC	1 cut(s)	1182
Bsp1286I	GDGCHC	1 cut(s)	848
Bsp1407I	TGTACA	1 cut(s)	937
Bsp143I	GATC	8 cut(s)	403, 441, 620, 637, 643, 912, 974, 1124
BspACI	CCGC	4 cut(s)	604, 812, 1062, 1172
BspANI	GGCC	4 cut(s)	186, 565, 897, 1013
BspCNI	CTCAG	1 cut(s)	736
BspFNI	CGCG	1 cut(s)	812
BspLI	GGNNCC	2 cut(s)	443, 741
BspMAI	CTGCAG	1 cut(s)	676
BspMI	ACCTGC	1 cut(s)	1252
BspPI	GGATC	6 cut(s)	398, 436, 449, 628, 982, 1119
BspQI	GCTCTTC	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	1182
BsrDI	GCAATG	1 cut(s)	1027
BsrGI	TGTACA	1 cut(s)	937
BsrI	ACTGG	3 cut(s)	517, 720, 1242
BssECI	CCNNGG	1 cut(s)	892
BssMI	GATC	8 cut(s)	403, 441, 620, 637, 643, 912, 974, 1124
Bst2UI	CCWGG	1 cut(s)	894
Bst6I	CTCTTC	2 cut(s)	291, 1206
BstAUI	TGTACA	1 cut(s)	937
BstC8I	GCNNGC	3 cut(s)	537, 599, 988
BstDEI	CTNAG	1 cut(s)	744
BstENI	CCTNNNNNAGG	1 cut(s)	1113
BstF5I	GGATG	7 cut(s)	109, 144, 353, 480, 656, 973, 1295
BstFNI	CGCG	1 cut(s)	812
BstH2I	RGCGCY	1 cut(s)	751
BstHHI	GCGC	3 cut(s)	750, 1020, 1048
BstKTI	GATC	8 cut(s)	406, 444, 623, 640, 646, 915, 977, 1127
BstMAI	GTCTC	1 cut(s)	1182
BstMBI	GATC	8 cut(s)	403, 441, 620, 637, 643, 912, 974, 1124
BstMWI	GCNNNNNNNGC	5 cut(s)	527, 536, 603, 863, 1178
BstNI	CCWGG	1 cut(s)	894
BstNSI	RCATGY	2 cut(s)	151, 601
BstSCI	CCNGG	2 cut(s)	444, 892
BstSFI	CTRYAG	2 cut(s)	672, 782
BstSLI	GKGCMC	1 cut(s)	848
BstUI	CGCG	1 cut(s)	812
BstV1I	GCAGC	3 cut(s)	970, 992, 1223
BstX2I	RGATCY	2 cut(s)	403, 441
BstXI	CCANNNNNNTGG	1 cut(s)	81
BstYI	RGATCY	2 cut(s)	403, 441
BsuRI	GGCC	4 cut(s)	186, 565, 897, 1013
BtrI	CACGTC	1 cut(s)	1088
BtsCI	GGATG	7 cut(s)	109, 144, 353, 480, 656, 973, 1295
BtsI	GCAGTG	2 cut(s)	509, 669
BtsIMutI	CAGTG	4 cut(s)	509, 510, 669, 713
BveI	ACCTGC	1 cut(s)	1252
Cac8I	GCNNGC	3 cut(s)	537, 599, 988
CaiI	CAGNNNCTG	1 cut(s)	986
CfoI	GCGC	3 cut(s)	750, 1020, 1048
Cfr13I	GGNCC	2 cut(s)	185, 563
Csp6I	GTAC	4 cut(s)	263, 754, 938, 1136
CviAII	CATG	8 cut(s)	148, 598, 624, 647, 830, 1015, 1169, 1300
CviQI	GTAC	4 cut(s)	263, 754, 938, 1136
DdeI	CTNAG	1 cut(s)	744
DpnI	GATC	8 cut(s)	405, 443, 622, 639, 645, 914, 976, 1126
DpnII	GATC	8 cut(s)	403, 441, 620, 637, 643, 912, 974, 1124
DraI	TTTAAA	2 cut(s)	684, 880
EaeI	YGGCCR	1 cut(s)	895
Eam1104I	CTCTTC	2 cut(s)	291, 1206
EarI	CTCTTC	2 cut(s)	291, 1206
Eco31I	GGTCTC	1 cut(s)	1182
Eco47III	AGCGCT	1 cut(s)	749
Eco57I	CTGAAG	2 cut(s)	420, 486
EcoNI	CCTNNNNNAGG	1 cut(s)	1113
EcoRI	GAATTC	1 cut(s)	803
EcoRII	CCWGG	1 cut(s)	892
EcoT22I	ATGCAT	1 cut(s)	111
FaeI	CATG	8 cut(s)	151, 601, 627, 650, 833, 1018, 1172, 1303
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	3 cut(s)	428, 521, 1188
FatI	CATG	8 cut(s)	147, 597, 623, 646, 829, 1014, 1168, 1299
FauI	CCCGC	1 cut(s)	1165
FbaI	TGATCA	1 cut(s)	637
Fnu4HI	GCNGC	3 cut(s)	981, 984, 1212
FokI	GGATG	7 cut(s)	96, 151, 360, 487, 663, 980, 1282
Fsp4HI	GCNGC	3 cut(s)	981, 984, 1212
FspBI	CTAG	3 cut(s)	540, 1005, 1112
FspI	TGCGCA	1 cut(s)	1019
GlaI	GCGC	3 cut(s)	749, 1019, 1047
GluI	GCNGC	3 cut(s)	981, 984, 1212
GsaI	CCCAGC	1 cut(s)	1261
GsuI	CTGGAG	1 cut(s)	737
HaeII	RGCGCY	1 cut(s)	751
HaeIII	GGCC	4 cut(s)	186, 565, 897, 1013
HapII	CCGG	2 cut(s)	446, 965
HhaI	GCGC	3 cut(s)	750, 1020, 1048
Hin1II	CATG	8 cut(s)	151, 601, 627, 650, 833, 1018, 1172, 1303
Hin6I	GCGC	3 cut(s)	748, 1018, 1046
HinP1I	GCGC	3 cut(s)	748, 1018, 1046
HindIII	AAGCTT	1 cut(s)	528
HinfI	GANTC	2 cut(s)	85, 758
HpaII	CCGG	2 cut(s)	446, 965
HphI	GGTGA	3 cut(s)	331, 596, 919
Hpy166II	GTNNAC	4 cut(s)	145, 846, 940, 1091
Hpy188I	TCNGA	5 cut(s)	637, 664, 798, 1001, 1234
Hpy188III	TCNNGA	4 cut(s)	54, 424, 641, 1112
Hpy8I	GTNNAC	4 cut(s)	145, 846, 940, 1091
HpyAV	CCTTC	4 cut(s)	102, 671, 704, 1109
HpyCH4IV	ACGT	3 cut(s)	569, 837, 1087
HpyF10VI	GCNNNNNNNGC	5 cut(s)	527, 536, 603, 863, 1178
HpyF3I	CTNAG	1 cut(s)	744
HpySE526I	ACGT	3 cut(s)	569, 837, 1087
Hsp92II	CATG	8 cut(s)	151, 601, 627, 650, 833, 1018, 1172, 1303
HspAI	GCGC	3 cut(s)	748, 1018, 1046
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	8 cut(s)	403, 441, 620, 637, 643, 912, 974, 1124
LguI	GCTCTTC	1 cut(s)	291
Lsp1109I	GCAGC	3 cut(s)	970, 992, 1223
LweI	GCATC	4 cut(s)	118, 439, 471, 699
MaeI	CTAG	3 cut(s)	540, 1005, 1112
MaeII	ACGT	3 cut(s)	569, 837, 1087
MaeIII	GTNAC	2 cut(s)	292, 584
MalI	GATC	8 cut(s)	405, 443, 622, 639, 645, 914, 976, 1126
MboI	GATC	8 cut(s)	403, 441, 620, 637, 643, 912, 974, 1124
MfeI	CAATTG	2 cut(s)	209, 250
MflI	RGATCY	2 cut(s)	403, 441
MhlI	GDGCHC	1 cut(s)	848
MlsI	TGGCCA	1 cut(s)	897
MluCI	AATT	7 cut(s)	189, 209, 250, 558, 803, 1129, 1228
MluNI	TGGCCA	1 cut(s)	897
MmeI	TCCRAC	2 cut(s)	706, 821
MnlI	CCTC	7 cut(s)	16, 207, 207, 965, 1003, 1119, 1209
Mox20I	TGGCCA	1 cut(s)	897
Mph1103I	ATGCAT	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	897
MseI	TTAA	3 cut(s)	683, 791, 879
MslI	CAYNNNNRTG	2 cut(s)	152, 273
Msp20I	TGGCCA	1 cut(s)	897
MspA1I	CMGCKG	2 cut(s)	787, 983
MspI	CCGG	2 cut(s)	446, 965
MspR9I	CCNGG	2 cut(s)	446, 894
MunI	CAATTG	2 cut(s)	209, 250
MvaI	CCWGG	1 cut(s)	894
MvnI	CGCG	1 cut(s)	812
MwoI	GCNNNNNNNGC	5 cut(s)	527, 536, 603, 863, 1178
NciI	CCSGG	1 cut(s)	446
NdeII	GATC	8 cut(s)	403, 441, 620, 637, 643, 912, 974, 1124
NlaIII	CATG	8 cut(s)	151, 601, 627, 650, 833, 1018, 1172, 1303
NlaIV	GGNNCC	2 cut(s)	443, 741
NmuCI	GTSAC	2 cut(s)	292, 584
NsbI	TGCGCA	1 cut(s)	1019
NsiI	ATGCAT	1 cut(s)	111
NspI	RCATGY	2 cut(s)	151, 601
PaeI	GCATGC	1 cut(s)	601
PciSI	GCTCTTC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	85, 758
PfoI	TCCNGGA	1 cut(s)	444
PkrI	GCNGC	3 cut(s)	982, 985, 1213
PsiI	TTATAA	1 cut(s)	1223
Psp6I	CCWGG	1 cut(s)	892
PspFI	CCCAGC	1 cut(s)	1257
PspGI	CCWGG	1 cut(s)	892
PspN4I	GGNNCC	2 cut(s)	443, 741
PspPI	GGNCC	2 cut(s)	185, 563
PsrI	GAACNNNNNNTAC	2 cut(s)	317, 349
PstI	CTGCAG	1 cut(s)	676
PstNI	CAGNNNCTG	1 cut(s)	986
PsuI	RGATCY	2 cut(s)	403, 441
PvuII	CAGCTG	2 cut(s)	787, 983
RsaI	GTAC	4 cut(s)	264, 755, 939, 1137
RsaNI	GTAC	4 cut(s)	263, 754, 938, 1136
RseI	CAYNNNNRTG	2 cut(s)	152, 273
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	683, 791, 879
SatI	GCNGC	3 cut(s)	981, 984, 1212
Sau3AI	GATC	8 cut(s)	403, 441, 620, 637, 643, 912, 974, 1124
Sau96I	GGNCC	2 cut(s)	185, 563
ScrFI	CCNGG	2 cut(s)	446, 894
SduI	GDGCHC	1 cut(s)	848
SfaNI	GCATC	4 cut(s)	118, 439, 471, 699
SfcI	CTRYAG	2 cut(s)	672, 782
SmiMI	CAYNNNNRTG	2 cut(s)	152, 273
SpeI	ACTAGT	1 cut(s)	1004
SphI	GCATGC	1 cut(s)	601
Sse9I	AATT	7 cut(s)	189, 209, 250, 558, 803, 1129, 1228
SsiI	CCGC	4 cut(s)	604, 812, 1062, 1172
SspMI	CTAG	3 cut(s)	540, 1005, 1112
StyD4I	CCNGG	2 cut(s)	444, 892
TaiI	ACGT	3 cut(s)	572, 840, 1090
TaqI	TCGA	3 cut(s)	29, 704, 915
TasI	AATT	7 cut(s)	189, 209, 250, 558, 803, 1129, 1228
TatI	WGTACW	2 cut(s)	937, 1135
TfiI	GAWTC	2 cut(s)	85, 758
Tru1I	TTAA	3 cut(s)	683, 791, 879
Tru9I	TTAA	3 cut(s)	683, 791, 879
TscAI	CASTG	4 cut(s)	509, 517, 676, 720
TseFI	GTSAC	2 cut(s)	292, 584
TseI	GCWGC	3 cut(s)	980, 983, 1211
Tsp45I	GTSAC	2 cut(s)	292, 584
TspRI	CASTG	4 cut(s)	509, 517, 676, 720
VneI	GTGCAC	1 cut(s)	844
XagI	CCTNNNNNAGG	1 cut(s)	1113
XapI	RAATTY	1 cut(s)	803
XbaI	TCTAGA	1 cut(s)	1111
XceI	RCATGY	2 cut(s)	151, 601
XcmI	CCANNNNNNNNNTGG	2 cut(s)	120, 349
XspI	CTAG	3 cut(s)	540, 1005, 1112
Zsp2I	ATGCAT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.