Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029759

Physical Location & Seq

Genomic Coordinates Forward (+)

66678846 .. 66681724

Gene Structure 2879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51835

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGCCCTCTTGGGGAAAGACTTGGCTTTCGATACTTGGTTTGTTTGATTGGTCTGGAAGCAACCCTATGCCCCCAGAGTTTTGGATTCTTCCTTCATTTCTTCCTATGCATCCAGCAAAAATGTGGTGCTATTGTAGGATGGTTTACATGCCAATGTCATACTTATATGGAAAAAGGTTTGTTGGCCCAATTACACCTCTCGTTCTTCAATTGAGGGAAGAACTTTTTATTCAACCTTACAATGAAATCAATTGGAAGAAAGTACGCCATCTATGTGCCAAAGTTTTAGGTATGCTTCCTTGTTGGGCTGAAGATCCAAATGGGGACTATTTCAAGAAGCATCTTGCAAGGATCCCGGATTATTTATGGGTTGCTGAAGATAGGATGAAGATGCAAAGTTTTGGCAGTCAGCAGTGGGACACTGGTTTTGCCATTCAAGCTTTGCTTGCTAGTAATCTCACAGATGAAATTGGGCCAACGTCAAGGACATCTGGTGACTTCAAAAGCATGCACCGCCACATTTCTAAAGGATCATGGACTTTCTCTGATCAAGATCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGTGTTGCCTTCTGTTGTCGATGATGCCACTGGAGATAGTTGGAGAAAAAATGGAACCTGAGCGCTTGTACGATTCTGTCAATGTTCTACTTTCGCTACAGCTGTTAAATCCGACAGAATTCTTCGCGGACATTGTGATTGAGCATGAATACGTTGAGTGCACTTCATCTGCAATACAGGCGTTAGTTCTGTTTAAAAAGCTAAACCCTGGCCACAGGAAGAAAGAGATCGAACATTCCATCACCAATGCTGTACACTACCTTGAAATATACAAATGCCGGATGGTTCATGGAGGATCGGCAGCTGCTGGCAAGACTTTCAGAACTAGTGAGGCCATGCGCAATGGGGTTAGTTTTCTACTTACGGCGCAGAGAGAGAACGGCGGTTGGGGAGAGAGCTATCTTTCACGTCCACAAAAGAAATACATTCCTCTAGAAGGAAACCGATCCAATTTAGTACATACTGCTTGGGCTATGATGGGTTTCATTCATGCGGGACAGGCAGAAAGAGACCCAACACCTCTTCATCGTGCAGCAAAGTTTATAATCAATTCTGAACTGGAAAATAGTGATTTTCCCAGCAGGTATCTATCTATCTTTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

399

Amino Acids

45.7

Weight (kDa)

7.21

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_N	PF13249	3 - 86	1.1e-12	Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C	PF13243	288 - 383	4.9e-08	Squalene-hopene cyclase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029759)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0148761 RchiOBHm_Chr2g0148891

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1139
Acc16I	TGCGCA	1 cut(s)	935
Acc36I	ACCTGC	1 cut(s)	1167
AccII	CGCG	1 cut(s)	722
AciI	CCGC	4 cut(s)	514, 722, 978, 1088
AclWI	GGATC	6 cut(s)	308, 346, 359, 538, 898, 1035
AcoI	YGGCCR	1 cut(s)	805
AcsI	RAATTY	1 cut(s)	713
AcuI	CTGAAG	2 cut(s)	330, 396
AfaI	GTAC	4 cut(s)	264, 665, 849, 1053
AfeI	AGCGCT	1 cut(s)	659
AfiI	CCNNNNNNNGG	2 cut(s)	11, 1031
AgsI	TTSAA	6 cut(s)	209, 233, 334, 437, 502, 860
AhlI	ACTAGT	1 cut(s)	920
AjiI	CACGTC	1 cut(s)	1004
AjnI	CCWGG	1 cut(s)	802
AluBI	AGCT	5 cut(s)	440, 697, 796, 899, 993
AluI	AGCT	5 cut(s)	440, 697, 796, 899, 993
Alw21I	GWGCWC	1 cut(s)	758
Alw26I	GTCTC	1 cut(s)	1098
Alw44I	GTGCAC	1 cut(s)	754
AlwI	GGATC	6 cut(s)	308, 346, 359, 538, 898, 1035
AlwNI	CAGNNNCTG	1 cut(s)	902
Aor51HI	AGCGCT	1 cut(s)	659
AoxI	GGCC	4 cut(s)	184, 473, 805, 927
ApaLI	GTGCAC	1 cut(s)	754
ApeKI	GCWGC	3 cut(s)	896, 899, 1127
ApoI	RAATTY	1 cut(s)	713
ArsI	GACNNNNNNTTYG	4 cut(s)	10, 42, 410, 442
AspLEI	GCGC	3 cut(s)	660, 936, 964
AspS9I	GGNCC	2 cut(s)	185, 473
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	2 cut(s)	506, 829
BaeGI	GKGCMC	1 cut(s)	758
BalI	TGGCCA	1 cut(s)	807
BamHI	GGATCC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	758
BbvI	GCAGC	3 cut(s)	886, 908, 1139
BccI	CCATC	6 cut(s)	133, 276, 555, 842, 871, 1066
BceAI	ACGGC	2 cut(s)	975, 991
BciT130I	CCWGG	1 cut(s)	804
BclI	TGATCA	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	1098
BcuI	ACTAGT	1 cut(s)	920
BfaI	CTAG	3 cut(s)	450, 921, 1028
BfmI	CTRYAG	2 cut(s)	582, 692
BfoI	RGCGCY	1 cut(s)	661
BfuAI	ACCTGC	1 cut(s)	1167
BisI	GCNGC	3 cut(s)	897, 900, 1128
BlsI	GCNGC	3 cut(s)	898, 901, 1129
Bme1390I	CCNGG	2 cut(s)	356, 804
BmgBI	CACGTC	1 cut(s)	1004
BmgT120I	GGNCC	2 cut(s)	185, 473
BmiI	GGNNCC	2 cut(s)	353, 651
BmrFI	CCNGG	2 cut(s)	356, 804
BmsI	GCATC	4 cut(s)	118, 349, 381, 609
BpmI	CTGGAG	1 cut(s)	647
Bpu10I	CCTNAGC	1 cut(s)	654
BpuMI	CCSGG	1 cut(s)	356
BsaBI	GATNNNNATC	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	1098
BsaJI	CCNNGG	1 cut(s)	802
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 1031
Bse1I	ACTGG	3 cut(s)	427, 630, 1158
Bse3DI	GCAATG	1 cut(s)	943
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	804
BseDI	CCNNGG	1 cut(s)	802
BseGI	GGATG	5 cut(s)	109, 144, 390, 566, 882
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	2 cut(s)	11, 1031
BseMI	GCAATG	1 cut(s)	943
BseMII	CTCAG	1 cut(s)	645
BseNI	ACTGG	3 cut(s)	427, 630, 1158
BseSI	GKGCMC	1 cut(s)	758
BseXI	GCAGC	3 cut(s)	886, 908, 1139
BseYI	CCCAGC	1 cut(s)	1172
BsgI	GTGCAG	1 cut(s)	1146
Bsh1236I	CGCG	1 cut(s)	722
BshFI	GGCC	4 cut(s)	186, 475, 807, 929
BsiHKAI	GWGCWC	1 cut(s)	758
BsiSI	CCGG	2 cut(s)	356, 874
BslFI	GGGAC	3 cut(s)	338, 431, 1104
BslI	CCNNNNNNNGG	2 cut(s)	11, 1031
BsmAI	GTCTC	1 cut(s)	1098
BsmFI	GGGAC	3 cut(s)	338, 431, 1104
BsnI	GGCC	4 cut(s)	186, 475, 807, 929
Bso31I	GGTCTC	1 cut(s)	1098
Bsp1286I	GDGCHC	1 cut(s)	758
Bsp1407I	TGTACA	1 cut(s)	847
Bsp143I	GATC	8 cut(s)	313, 351, 530, 547, 553, 822, 890, 1040
BspACI	CCGC	4 cut(s)	514, 722, 978, 1088
BspANI	GGCC	4 cut(s)	186, 475, 807, 929
BspCNI	CTCAG	1 cut(s)	646
BspFNI	CGCG	1 cut(s)	722
BspLI	GGNNCC	2 cut(s)	353, 651
BspMAI	CTGCAG	1 cut(s)	586
BspMI	ACCTGC	1 cut(s)	1167
BspPI	GGATC	6 cut(s)	308, 346, 359, 538, 898, 1035
BspTNI	GGTCTC	1 cut(s)	1098
BsrDI	GCAATG	1 cut(s)	943
BsrGI	TGTACA	1 cut(s)	847
BsrI	ACTGG	3 cut(s)	427, 630, 1158
BssECI	CCNNGG	1 cut(s)	802
BssMI	GATC	8 cut(s)	313, 351, 530, 547, 553, 822, 890, 1040
Bst2UI	CCWGG	1 cut(s)	804
Bst6I	CTCTTC	1 cut(s)	1122
BstAUI	TGTACA	1 cut(s)	847
BstC8I	GCNNGC	3 cut(s)	447, 509, 904
BstDEI	CTNAG	1 cut(s)	654
BstENI	CCTNNNNNAGG	1 cut(s)	1029
BstF5I	GGATG	5 cut(s)	109, 144, 390, 566, 882
BstFNI	CGCG	1 cut(s)	722
BstH2I	RGCGCY	1 cut(s)	661
BstHHI	GCGC	3 cut(s)	660, 936, 964
BstKTI	GATC	8 cut(s)	316, 354, 533, 550, 556, 825, 893, 1043
BstMAI	GTCTC	1 cut(s)	1098
BstMBI	GATC	8 cut(s)	313, 351, 530, 547, 553, 822, 890, 1040
BstMWI	GCNNNNNNNGC	5 cut(s)	437, 446, 513, 773, 1094
BstNI	CCWGG	1 cut(s)	804
BstNSI	RCATGY	2 cut(s)	151, 511
BstSCI	CCNGG	2 cut(s)	354, 802
BstSFI	CTRYAG	2 cut(s)	582, 692
BstSLI	GKGCMC	1 cut(s)	758
BstUI	CGCG	1 cut(s)	722
BstV1I	GCAGC	3 cut(s)	886, 908, 1139
BstX2I	RGATCY	2 cut(s)	313, 351
BstXI	CCANNNNNNTGG	1 cut(s)	81
BstYI	RGATCY	2 cut(s)	313, 351
BsuRI	GGCC	4 cut(s)	186, 475, 807, 929
BtrI	CACGTC	1 cut(s)	1004
BtsCI	GGATG	5 cut(s)	109, 144, 390, 566, 882
BtsI	GCAGTG	2 cut(s)	419, 579
BtsIMutI	CAGTG	4 cut(s)	419, 420, 579, 623
BveI	ACCTGC	1 cut(s)	1167
Cac8I	GCNNGC	3 cut(s)	447, 509, 904
CaiI	CAGNNNCTG	1 cut(s)	902
CfoI	GCGC	3 cut(s)	660, 936, 964
Cfr13I	GGNCC	2 cut(s)	185, 473
Csp6I	GTAC	4 cut(s)	263, 664, 848, 1052
CviAII	CATG	8 cut(s)	148, 508, 534, 557, 740, 884, 931, 1085
CviQI	GTAC	4 cut(s)	263, 664, 848, 1052
DdeI	CTNAG	1 cut(s)	654
DpnI	GATC	8 cut(s)	315, 353, 532, 549, 555, 824, 892, 1042
DpnII	GATC	8 cut(s)	313, 351, 530, 547, 553, 822, 890, 1040
DraI	TTTAAA	2 cut(s)	594, 790
EaeI	YGGCCR	1 cut(s)	805
Eam1104I	CTCTTC	1 cut(s)	1122
EarI	CTCTTC	1 cut(s)	1122
Eco31I	GGTCTC	1 cut(s)	1098
Eco47III	AGCGCT	1 cut(s)	659
Eco57I	CTGAAG	2 cut(s)	330, 396
EcoNI	CCTNNNNNAGG	1 cut(s)	1029
EcoRI	GAATTC	1 cut(s)	713
EcoRII	CCWGG	1 cut(s)	802
EcoT22I	ATGCAT	1 cut(s)	111
FaeI	CATG	8 cut(s)	151, 511, 537, 560, 743, 887, 934, 1088
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	3 cut(s)	338, 431, 1104
FatI	CATG	8 cut(s)	147, 507, 533, 556, 739, 883, 930, 1084
FauI	CCCGC	1 cut(s)	1081
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	3 cut(s)	897, 900, 1128
FokI	GGATG	5 cut(s)	96, 151, 397, 573, 889
Fsp4HI	GCNGC	3 cut(s)	897, 900, 1128
FspBI	CTAG	3 cut(s)	450, 921, 1028
FspI	TGCGCA	1 cut(s)	935
GlaI	GCGC	3 cut(s)	659, 935, 963
GluI	GCNGC	3 cut(s)	897, 900, 1128
GsaI	CCCAGC	1 cut(s)	1176
GsuI	CTGGAG	1 cut(s)	647
HaeII	RGCGCY	1 cut(s)	661
HaeIII	GGCC	4 cut(s)	186, 475, 807, 929
HapII	CCGG	2 cut(s)	356, 874
HhaI	GCGC	3 cut(s)	660, 936, 964
Hin1II	CATG	8 cut(s)	151, 511, 537, 560, 743, 887, 934, 1088
Hin6I	GCGC	3 cut(s)	658, 934, 962
HinP1I	GCGC	3 cut(s)	658, 934, 962
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	2 cut(s)	85, 668
HpaII	CCGG	2 cut(s)	356, 874
HphI	GGTGA	2 cut(s)	506, 829
Hpy166II	GTNNAC	4 cut(s)	145, 756, 850, 1007
Hpy188I	TCNGA	5 cut(s)	547, 574, 708, 917, 1150
Hpy188III	TCNNGA	4 cut(s)	54, 334, 551, 1028
Hpy8I	GTNNAC	4 cut(s)	145, 756, 850, 1007
HpyAV	CCTTC	4 cut(s)	102, 581, 614, 1025
HpyCH4IV	ACGT	3 cut(s)	479, 747, 1003
HpyCH4V	TGCA	9 cut(s)	109, 347, 394, 511, 579, 584, 756, 767, 1127
HpyF10VI	GCNNNNNNNGC	5 cut(s)	437, 446, 513, 773, 1094
HpyF3I	CTNAG	1 cut(s)	654
HpySE526I	ACGT	3 cut(s)	479, 747, 1003
Hsp92II	CATG	8 cut(s)	151, 511, 537, 560, 743, 887, 934, 1088
HspAI	GCGC	3 cut(s)	658, 934, 962
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	8 cut(s)	313, 351, 530, 547, 553, 822, 890, 1040
Lsp1109I	GCAGC	3 cut(s)	886, 908, 1139
LweI	GCATC	4 cut(s)	118, 349, 381, 609
MaeI	CTAG	3 cut(s)	450, 921, 1028
MaeII	ACGT	3 cut(s)	479, 747, 1003
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	8 cut(s)	315, 353, 532, 549, 555, 824, 892, 1042
MboI	GATC	8 cut(s)	313, 351, 530, 547, 553, 822, 890, 1040
MfeI	CAATTG	2 cut(s)	209, 250
MflI	RGATCY	2 cut(s)	313, 351
MhlI	GDGCHC	1 cut(s)	758
MlsI	TGGCCA	1 cut(s)	807
MluCI	AATT	7 cut(s)	189, 209, 250, 468, 713, 1045, 1144
MluNI	TGGCCA	1 cut(s)	807
MmeI	TCCRAC	2 cut(s)	616, 731
MnlI	CCTC	7 cut(s)	16, 207, 207, 881, 919, 1035, 1125
Mox20I	TGGCCA	1 cut(s)	807
Mph1103I	ATGCAT	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	807
MseI	TTAA	3 cut(s)	593, 701, 789
MslI	CAYNNNNRTG	2 cut(s)	152, 273
Msp20I	TGGCCA	1 cut(s)	807
MspA1I	CMGCKG	2 cut(s)	697, 899
MspI	CCGG	2 cut(s)	356, 874
MspR9I	CCNGG	2 cut(s)	356, 804
MunI	CAATTG	2 cut(s)	209, 250
MvaI	CCWGG	1 cut(s)	804
MvnI	CGCG	1 cut(s)	722
MwoI	GCNNNNNNNGC	5 cut(s)	437, 446, 513, 773, 1094
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	8 cut(s)	313, 351, 530, 547, 553, 822, 890, 1040
NlaIII	CATG	8 cut(s)	151, 511, 537, 560, 743, 887, 934, 1088
NlaIV	GGNNCC	2 cut(s)	353, 651
NmuCI	GTSAC	1 cut(s)	494
NsbI	TGCGCA	1 cut(s)	935
NsiI	ATGCAT	1 cut(s)	111
NspI	RCATGY	2 cut(s)	151, 511
PaeI	GCATGC	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	85, 668
PfoI	TCCNGGA	1 cut(s)	354
PkrI	GCNGC	3 cut(s)	898, 901, 1129
PsiI	TTATAA	1 cut(s)	1139
Psp6I	CCWGG	1 cut(s)	802
PspFI	CCCAGC	1 cut(s)	1172
PspGI	CCWGG	1 cut(s)	802
PspN4I	GGNNCC	2 cut(s)	353, 651
PspPI	GGNCC	2 cut(s)	185, 473
PstI	CTGCAG	1 cut(s)	586
PstNI	CAGNNNCTG	1 cut(s)	902
PsuI	RGATCY	2 cut(s)	313, 351
PvuII	CAGCTG	2 cut(s)	697, 899
RsaI	GTAC	4 cut(s)	264, 665, 849, 1053
RsaNI	GTAC	4 cut(s)	263, 664, 848, 1052
RseI	CAYNNNNRTG	2 cut(s)	152, 273
SaqAI	TTAA	3 cut(s)	593, 701, 789
SatI	GCNGC	3 cut(s)	897, 900, 1128
Sau3AI	GATC	8 cut(s)	313, 351, 530, 547, 553, 822, 890, 1040
Sau96I	GGNCC	2 cut(s)	185, 473
ScrFI	CCNGG	2 cut(s)	356, 804
SduI	GDGCHC	1 cut(s)	758
SfaNI	GCATC	4 cut(s)	118, 349, 381, 609
SfcI	CTRYAG	2 cut(s)	582, 692
SmiMI	CAYNNNNRTG	2 cut(s)	152, 273
SpeI	ACTAGT	1 cut(s)	920
SphI	GCATGC	1 cut(s)	511
Sse9I	AATT	7 cut(s)	189, 209, 250, 468, 713, 1045, 1144
SsiI	CCGC	4 cut(s)	514, 722, 978, 1088
SspMI	CTAG	3 cut(s)	450, 921, 1028
StyD4I	CCNGG	2 cut(s)	354, 802
TaiI	ACGT	3 cut(s)	482, 750, 1006
TaqI	TCGA	3 cut(s)	29, 614, 825
TasI	AATT	7 cut(s)	189, 209, 250, 468, 713, 1045, 1144
TatI	WGTACW	2 cut(s)	847, 1051
TfiI	GAWTC	2 cut(s)	85, 668
Tru1I	TTAA	3 cut(s)	593, 701, 789
Tru9I	TTAA	3 cut(s)	593, 701, 789
TscAI	CASTG	4 cut(s)	419, 427, 586, 630
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	3 cut(s)	896, 899, 1127
Tsp45I	GTSAC	1 cut(s)	494
TspRI	CASTG	4 cut(s)	419, 427, 586, 630
VneI	GTGCAC	1 cut(s)	754
XagI	CCTNNNNNAGG	1 cut(s)	1029
XapI	RAATTY	1 cut(s)	713
XbaI	TCTAGA	1 cut(s)	1027
XceI	RCATGY	2 cut(s)	151, 511
XcmI	CCANNNNNNNNNTGG	1 cut(s)	120
XspI	CTAG	3 cut(s)	450, 921, 1028
Zsp2I	ATGCAT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.