Rhamnogalacturonate lyase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0150231 |
| rosa_laevigata | RLG00000020480 |
| rosa_multiflora | Rmu_ssc0000020.1_g000006 |
| rosa_samantha | Rh2BG491300 Rh2DG500100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 122 |
| AfaI | GTAC | 1 cut(s) | 198 |
| AgsI | TTSAA | 1 cut(s) | 106 |
| AhlI | ACTAGT | 1 cut(s) | 193 |
| Alw26I | GTCTC | 1 cut(s) | 147 |
| AoxI | GGCC | 1 cut(s) | 122 |
| BalI | TGGCCA | 1 cut(s) | 124 |
| BauI | CACGAG | 1 cut(s) | 67 |
| BclI | TGATCA | 1 cut(s) | 163 |
| BcoDI | GTCTC | 1 cut(s) | 147 |
| BcuI | ACTAGT | 1 cut(s) | 193 |
| BfaI | CTAG | 1 cut(s) | 194 |
| BpuEI | CTTGAG | 1 cut(s) | 129 |
| BsaWI | WCCGGW | 1 cut(s) | 49 |
| BseMII | CTCAG | 1 cut(s) | 152 |
| BshFI | GGCC | 1 cut(s) | 124 |
| BsiSI | CCGG | 1 cut(s) | 50 |
| BsmAI | GTCTC | 1 cut(s) | 147 |
| BsnI | GGCC | 1 cut(s) | 124 |
| Bsp143I | GATC | 2 cut(s) | 163, 202 |
| BspANI | GGCC | 1 cut(s) | 124 |
| BspCNI | CTCAG | 1 cut(s) | 151 |
| BssMI | GATC | 2 cut(s) | 163, 202 |
| BssSI | CACGAG | 1 cut(s) | 67 |
| Bst2BI | CACGAG | 1 cut(s) | 67 |
| Bst4CI | ACNGT | 1 cut(s) | 180 |
| BstDEI | CTNAG | 1 cut(s) | 138 |
| BstKTI | GATC | 2 cut(s) | 166, 205 |
| BstMAI | GTCTC | 1 cut(s) | 147 |
| BstMBI | GATC | 2 cut(s) | 163, 202 |
| BsuRI | GGCC | 1 cut(s) | 124 |
| BtsIMutI | CAGTG | 1 cut(s) | 176 |
| Csp6I | GTAC | 1 cut(s) | 197 |
| CviAII | CATG | 1 cut(s) | 200 |
| CviJI | RGCY | 1 cut(s) | 124 |
| CviKI_1 | RGCY | 1 cut(s) | 124 |
| CviQI | GTAC | 1 cut(s) | 197 |
| DdeI | CTNAG | 1 cut(s) | 138 |
| DpnI | GATC | 2 cut(s) | 165, 204 |
| DpnII | GATC | 2 cut(s) | 163, 202 |
| EaeI | YGGCCR | 1 cut(s) | 122 |
| FaeI | CATG | 1 cut(s) | 203 |
| FaiI | YATR | 2 cut(s) | 127, 201 |
| FatI | CATG | 1 cut(s) | 199 |
| FbaI | TGATCA | 1 cut(s) | 163 |
| FspBI | CTAG | 1 cut(s) | 194 |
| HaeIII | GGCC | 1 cut(s) | 124 |
| HapII | CCGG | 1 cut(s) | 50 |
| Hin1II | CATG | 1 cut(s) | 203 |
| HinfI | GANTC | 1 cut(s) | 53 |
| HpaII | CCGG | 1 cut(s) | 50 |
| Hpy166II | GTNNAC | 1 cut(s) | 176 |
| Hpy188I | TCNGA | 1 cut(s) | 163 |
| Hpy188III | TCNNGA | 3 cut(s) | 79, 115, 146 |
| Hpy8I | GTNNAC | 1 cut(s) | 176 |
| HpyAV | CCTTC | 1 cut(s) | 165 |
| HpyCH4III | ACNGT | 1 cut(s) | 180 |
| HpyF3I | CTNAG | 1 cut(s) | 138 |
| Hsp92II | CATG | 1 cut(s) | 203 |
| Ksp22I | TGATCA | 1 cut(s) | 163 |
| Kzo9I | GATC | 2 cut(s) | 163, 202 |
| LmnI | GCTCC | 1 cut(s) | 49 |
| LpnPI | CCDG | 4 cut(s) | 33, 63, 64, 196 |
| MaeI | CTAG | 1 cut(s) | 194 |
| MalI | GATC | 2 cut(s) | 165, 204 |
| MboI | GATC | 2 cut(s) | 163, 202 |
| MboII | GAAGA | 1 cut(s) | 150 |
| MlsI | TGGCCA | 1 cut(s) | 124 |
| MluCI | AATT | 3 cut(s) | 37, 61, 130 |
| MluNI | TGGCCA | 1 cut(s) | 124 |
| Mox20I | TGGCCA | 1 cut(s) | 124 |
| MscI | TGGCCA | 1 cut(s) | 124 |
| MseI | TTAA | 1 cut(s) | 36 |
| Msp20I | TGGCCA | 1 cut(s) | 124 |
| MspI | CCGG | 1 cut(s) | 50 |
| NdeII | GATC | 2 cut(s) | 163, 202 |
| NlaIII | CATG | 1 cut(s) | 203 |
| PfeI | GAWTC | 1 cut(s) | 53 |
| RsaI | GTAC | 1 cut(s) | 198 |
| RsaNI | GTAC | 1 cut(s) | 197 |
| SaqAI | TTAA | 1 cut(s) | 36 |
| Sau3AI | GATC | 2 cut(s) | 163, 202 |
| SetI | ASST | 1 cut(s) | 12 |
| SgeI | CNNG | 9 cut(s) | 32, 62, 79, 81, 91, 127, 158, 195, 206 |
| SmlI | CTYRAG | 1 cut(s) | 144 |
| SmoI | CTYRAG | 1 cut(s) | 144 |
| SpeI | ACTAGT | 1 cut(s) | 193 |
| Sse9I | AATT | 3 cut(s) | 37, 61, 130 |
| SspMI | CTAG | 1 cut(s) | 194 |
| TaaI | ACNGT | 1 cut(s) | 180 |
| TasI | AATT | 3 cut(s) | 37, 61, 130 |
| TatI | WGTACW | 1 cut(s) | 196 |
| TfiI | GAWTC | 1 cut(s) | 53 |
| Tru1I | TTAA | 1 cut(s) | 36 |
| Tru9I | TTAA | 1 cut(s) | 36 |
| TscAI | CASTG | 1 cut(s) | 183 |
| TspRI | CASTG | 1 cut(s) | 183 |
| XspI | CTAG | 1 cut(s) | 194 |