Rhamnogalacturonate lyase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0150231 |
| rosa_laevigata | RLG00000020480 |
| rosa_multiflora | Rmu_ssc0000020.1_g000006 |
| rosa_samantha | Rh2BG491300 Rh2DG500100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 263 |
| AclWI | GGATC | 1 cut(s) | 286 |
| AcoI | YGGCCR | 1 cut(s) | 122 |
| AfaI | GTAC | 2 cut(s) | 198, 209 |
| AgsI | TTSAA | 1 cut(s) | 106 |
| AhlI | ACTAGT | 1 cut(s) | 193 |
| AjnI | CCWGG | 1 cut(s) | 265 |
| AluBI | AGCT | 1 cut(s) | 245 |
| AluI | AGCT | 1 cut(s) | 245 |
| Alw26I | GTCTC | 1 cut(s) | 147 |
| AlwI | GGATC | 1 cut(s) | 286 |
| AoxI | GGCC | 1 cut(s) | 122 |
| BalI | TGGCCA | 1 cut(s) | 124 |
| BauI | CACGAG | 1 cut(s) | 67 |
| BciT130I | CCWGG | 1 cut(s) | 267 |
| BciVI | GTATCC | 1 cut(s) | 296 |
| BclI | TGATCA | 1 cut(s) | 163 |
| BcoDI | GTCTC | 1 cut(s) | 147 |
| BcuI | ACTAGT | 1 cut(s) | 193 |
| BfaI | CTAG | 1 cut(s) | 194 |
| BfuI | GTATCC | 1 cut(s) | 296 |
| Bme1390I | CCNGG | 1 cut(s) | 267 |
| BmrFI | CCNGG | 1 cut(s) | 267 |
| BpmI | CTGGAG | 1 cut(s) | 288 |
| BpuEI | CTTGAG | 1 cut(s) | 129 |
| BsaWI | WCCGGW | 1 cut(s) | 49 |
| BseBI | CCWGG | 1 cut(s) | 267 |
| BseMII | CTCAG | 1 cut(s) | 152 |
| BshFI | GGCC | 1 cut(s) | 124 |
| BsiSI | CCGG | 1 cut(s) | 50 |
| BslFI | GGGAC | 2 cut(s) | 208, 267 |
| BsmAI | GTCTC | 1 cut(s) | 147 |
| BsmFI | GGGAC | 2 cut(s) | 208, 267 |
| BsnI | GGCC | 1 cut(s) | 124 |
| Bsp143I | GATC | 3 cut(s) | 163, 202, 278 |
| BspACI | CCGC | 1 cut(s) | 263 |
| BspANI | GGCC | 1 cut(s) | 124 |
| BspCNI | CTCAG | 1 cut(s) | 151 |
| BspPI | GGATC | 1 cut(s) | 286 |
| BssMI | GATC | 3 cut(s) | 163, 202, 278 |
| BssSI | CACGAG | 1 cut(s) | 67 |
| Bst2BI | CACGAG | 1 cut(s) | 67 |
| Bst2UI | CCWGG | 1 cut(s) | 267 |
| Bst4CI | ACNGT | 1 cut(s) | 180 |
| BstDEI | CTNAG | 1 cut(s) | 138 |
| BstKTI | GATC | 3 cut(s) | 166, 205, 281 |
| BstMAI | GTCTC | 1 cut(s) | 147 |
| BstMBI | GATC | 3 cut(s) | 163, 202, 278 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 242 |
| BstNI | CCWGG | 1 cut(s) | 267 |
| BstSCI | CCNGG | 1 cut(s) | 265 |
| BsuI | GTATCC | 1 cut(s) | 296 |
| BsuRI | GGCC | 1 cut(s) | 124 |
| BtsIMutI | CAGTG | 1 cut(s) | 176 |
| Csp6I | GTAC | 2 cut(s) | 197, 208 |
| CviAII | CATG | 4 cut(s) | 20, 200, 282, 320 |
| CviJI | RGCY | 2 cut(s) | 124, 245 |
| CviKI_1 | RGCY | 2 cut(s) | 124, 245 |
| CviQI | GTAC | 2 cut(s) | 197, 208 |
| DdeI | CTNAG | 1 cut(s) | 138 |
| DpnI | GATC | 3 cut(s) | 165, 204, 280 |
| DpnII | GATC | 3 cut(s) | 163, 202, 278 |
| EaeI | YGGCCR | 1 cut(s) | 122 |
| EciI | GGCGGA | 1 cut(s) | 252 |
| EcoRII | CCWGG | 1 cut(s) | 265 |
| FaeI | CATG | 4 cut(s) | 23, 203, 285, 323 |
| FaiI | YATR | 6 cut(s) | 21, 127, 201, 249, 283, 321 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 229, 261 |
| FaqI | GGGAC | 2 cut(s) | 208, 267 |
| FatI | CATG | 4 cut(s) | 19, 199, 281, 319 |
| FbaI | TGATCA | 1 cut(s) | 163 |
| FspBI | CTAG | 1 cut(s) | 194 |
| GsuI | CTGGAG | 1 cut(s) | 288 |
| HaeIII | GGCC | 1 cut(s) | 124 |
| HapII | CCGG | 1 cut(s) | 50 |
| Hin1II | CATG | 4 cut(s) | 23, 203, 285, 323 |
| HinfI | GANTC | 2 cut(s) | 53, 316 |
| HpaII | CCGG | 1 cut(s) | 50 |
| Hpy166II | GTNNAC | 1 cut(s) | 176 |
| Hpy188I | TCNGA | 1 cut(s) | 163 |
| Hpy188III | TCNNGA | 4 cut(s) | 79, 115, 146, 313 |
| Hpy8I | GTNNAC | 1 cut(s) | 176 |
| HpyAV | CCTTC | 2 cut(s) | 165, 236 |
| HpyCH4III | ACNGT | 1 cut(s) | 180 |
| HpyCH4IV | ACGT | 1 cut(s) | 210 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 242 |
| HpyF3I | CTNAG | 1 cut(s) | 138 |
| HpySE526I | ACGT | 1 cut(s) | 210 |
| Hsp92II | CATG | 4 cut(s) | 23, 203, 285, 323 |
| Ksp22I | TGATCA | 1 cut(s) | 163 |
| Kzo9I | GATC | 3 cut(s) | 163, 202, 278 |
| LmnI | GCTCC | 1 cut(s) | 49 |
| LpnPI | CCDG | 6 cut(s) | 63, 64, 196, 252, 279, 298 |
| MaeI | CTAG | 1 cut(s) | 194 |
| MaeII | ACGT | 1 cut(s) | 210 |
| MalI | GATC | 3 cut(s) | 165, 204, 280 |
| MboI | GATC | 3 cut(s) | 163, 202, 278 |
| MboII | GAAGA | 1 cut(s) | 150 |
| MlsI | TGGCCA | 1 cut(s) | 124 |
| MluCI | AATT | 3 cut(s) | 37, 61, 130 |
| MluNI | TGGCCA | 1 cut(s) | 124 |
| MlyI | GAGTC | 1 cut(s) | 310 |
| Mox20I | TGGCCA | 1 cut(s) | 124 |
| MscI | TGGCCA | 1 cut(s) | 124 |
| MseI | TTAA | 2 cut(s) | 36, 348 |
| Msp20I | TGGCCA | 1 cut(s) | 124 |
| MspI | CCGG | 1 cut(s) | 50 |
| MspR9I | CCNGG | 1 cut(s) | 267 |
| MvaI | CCWGG | 1 cut(s) | 267 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 242 |
| NdeII | GATC | 3 cut(s) | 163, 202, 278 |
| NlaIII | CATG | 4 cut(s) | 23, 203, 285, 323 |
| PfeI | GAWTC | 1 cut(s) | 53 |
| PleI | GAGTC | 1 cut(s) | 310 |
| PpsI | GAGTC | 1 cut(s) | 310 |
| Psp6I | CCWGG | 1 cut(s) | 265 |
| PspGI | CCWGG | 1 cut(s) | 265 |
| RsaI | GTAC | 2 cut(s) | 198, 209 |
| RsaNI | GTAC | 2 cut(s) | 197, 208 |
| SaqAI | TTAA | 2 cut(s) | 36, 348 |
| Sau3AI | GATC | 3 cut(s) | 163, 202, 278 |
| SchI | GAGTC | 1 cut(s) | 310 |
| ScrFI | CCNGG | 1 cut(s) | 267 |
| SetI | ASST | 5 cut(s) | 12, 213, 247, 309, 337 |
| SmlI | CTYRAG | 1 cut(s) | 144 |
| SmoI | CTYRAG | 1 cut(s) | 144 |
| SpeI | ACTAGT | 1 cut(s) | 193 |
| Sse9I | AATT | 3 cut(s) | 37, 61, 130 |
| SsiI | CCGC | 1 cut(s) | 263 |
| SspMI | CTAG | 1 cut(s) | 194 |
| StyD4I | CCNGG | 1 cut(s) | 265 |
| TaaI | ACNGT | 1 cut(s) | 180 |
| TaiI | ACGT | 1 cut(s) | 213 |
| TaqI | TCGA | 1 cut(s) | 358 |
| TasI | AATT | 3 cut(s) | 37, 61, 130 |
| TatI | WGTACW | 1 cut(s) | 196 |
| TfiI | GAWTC | 1 cut(s) | 53 |
| Tru1I | TTAA | 2 cut(s) | 36, 348 |
| Tru9I | TTAA | 2 cut(s) | 36, 348 |
| TscAI | CASTG | 1 cut(s) | 183 |
| TspDTI | ATGAA | 2 cut(s) | 218, 331 |
| TspRI | CASTG | 1 cut(s) | 183 |
| XspI | CTAG | 1 cut(s) | 194 |