Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024833

Physical Location & Seq

Genomic Coordinates Forward (+)

70670246 .. 70670486

Gene Structure 241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52239

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGAAGAAACCCGCAGAGCTCGTGTTCATCCCCTACGCGGGTGCCGGCCACCTCGTACCGACGGTTGAGATCGCCAAGCTCCTCGTATCTCGAGACGACCACCTCTTCATCACCGTCCTCATCATGAAGACACCCTTCGGCTCCACAGCCACCGACACCTATATAGACTCCATCGCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

60

Amino Acids

6.52

Weight (kDa)

5.99

Isoelectric Point (pI)

25.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024833)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0153311 RchiOBHm_Chr2g0153341
rosa_rugosa	Rorug01G0138100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccII	CGCG	1 cut(s)	38
AciI	CCGC	2 cut(s)	12, 38
AcoI	YGGCCR	1 cut(s)	46
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	2 cut(s)	37, 38
AluBI	AGCT	2 cut(s)	19, 79
AluI	AGCT	2 cut(s)	19, 79
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	87
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	21
BauI	CACGAG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	21
BccI	CCATC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	87
BmeT110I	CYCGRG	1 cut(s)	90
BmiI	GGNNCC	2 cut(s)	43, 142
BpiI	GAAGAC	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 38
Bse118I	RCCGGY	1 cut(s)	44
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	37, 38
BseRI	GAGGAG	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	2 cut(s)	37, 38
BsmAI	GTCTC	1 cut(s)	87
BsmBI	CGTCTC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	48
BsoBI	CYCGRG	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	2 cut(s)	12, 38
BspANI	GGCC	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	43, 142
BspT107I	GGYRCC	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssMI	GATC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	20
Bst2BI	CACGAG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	64, 115
Bst6I	CTCTTC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	38
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	69
BstUI	CGCG	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	48
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	46
CciI	TCATGA	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	5 cut(s)	19, 48, 79, 141, 149
CviKI_1	RGCY	5 cut(s)	19, 48, 79, 141, 149
CviQI	GTAC	1 cut(s)	56
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	19
Eco88I	CYCGRG	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	87
FaeI	CATG	1 cut(s)	127
FaiI	YATR	3 cut(s)	125, 162, 164
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FatI	CATG	1 cut(s)	123
FauI	CCCGC	2 cut(s)	19, 31
FokI	GGATG	1 cut(s)	14
FriOI	GRGCYC	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	45
Hin1II	CATG	1 cut(s)	127
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	3 cut(s)	90, 92, 124
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	2 cut(s)	64, 115
Hsp92II	CATG	1 cut(s)	127
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	84, 146
LpnPI	CCDG	1 cut(s)	58
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	3 cut(s)	16, 97, 139
MhlI	GDGCHC	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	4 cut(s)	62, 92, 113, 128
MroNI	GCCGGC	1 cut(s)	44
MspI	CCGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	38
NaeI	GCCGGC	1 cut(s)	46
NdeII	GATC	1 cut(s)	69
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	2 cut(s)	43, 142
PaeR7I	CTCGAG	1 cut(s)	90
PagI	TCATGA	1 cut(s)	123
PdiI	GCCGGC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp124BI	GAGCTC	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	43, 142
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	5 cut(s)	21, 54, 81, 105, 161
Sfr274I	CTCGAG	1 cut(s)	90
SlaI	CTCGAG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
SsiI	CCGC	2 cut(s)	12, 38
SstI	GAGCTC	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	64, 115
TaqI	TCGA	1 cut(s)	91
TspDTI	ATGAA	4 cut(s)	16, 17, 97, 140
XhoI	CTCGAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.