Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024833

Physical Location & Seq

Genomic Coordinates Forward (+)

70704600 .. 70704797

Gene Structure 198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52242

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGAAGAAAGCTTTAGAGCTAATCTCCATCCCAATCCCAGGGATTGGTCACTTCGTCTCAACAGTTGAGATTGCAAAGCTCCTTTTCTTTCGAGATGACAACCTCTTCATCACAATCCTTATCATGAAACTCCCCTTCACCGTAGACGGCAGCGATGCCTACATCAAGTCCTTGGCAGACCTATCGTTGAAGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

65

Amino Acids

7.22

Weight (kDa)

6.53

Isoelectric Point (pI)

9.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0024833)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0153311 RchiOBHm_Chr2g0153341
rosa_rugosa	Rorug01G0138100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	2 cut(s)	38, 44
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	3 cut(s)	11, 19, 79
AluI	AGCT	3 cut(s)	11, 19, 79
Alw26I	GTCTC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	1 cut(s)	35
BceAI	ACGGC	1 cut(s)	163
BcgI	CGANNNNNNTGC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	61
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	145
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BsaJI	CCNNGG	3 cut(s)	37, 38, 171
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 44
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	3 cut(s)	37, 38, 171
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	38, 44
BseXI	GCAGC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	38, 44
BsmAI	GTCTC	1 cut(s)	61
BsmBI	CGTCTC	1 cut(s)	61
BspHI	TCATGA	1 cut(s)	123
BssECI	CCNNGG	3 cut(s)	37, 38, 171
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	64, 142
Bst6I	CTCTTC	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	27
CciI	TCATGA	1 cut(s)	123
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	3 cut(s)	11, 19, 79
CviKI_1	RGCY	3 cut(s)	11, 19, 79
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	1 cut(s)	127
FaiI	YATR	1 cut(s)	125
FatI	CATG	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	151
FokI	GGATG	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	151
GluI	GCNGC	1 cut(s)	151
Hin1II	CATG	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	9
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188III	TCNNGA	2 cut(s)	92, 124
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	2 cut(s)	64, 142
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	194
Hsp92II	CATG	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	84
LpnPI	CCDG	2 cut(s)	24, 51
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	1 cut(s)	145
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	47
MboII	GAAGA	2 cut(s)	16, 97
MnlI	CCTC	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
NlaIII	CATG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	47
PagI	TCATGA	1 cut(s)	123
PasI	CCCWGGG	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
SatI	GCNGC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	6 cut(s)	13, 21, 81, 105, 183, 197
SfaNI	GCATC	1 cut(s)	145
SgeI	CNNG	6 cut(s)	50, 51, 104, 136, 178, 184
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	64, 142
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	1 cut(s)	150
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	3 cut(s)	17, 97, 140
Van91I	CCANNNNNTGG	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.