RchiOBHm_Chr2g0157111

Cell division control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0024847
Physical Location & Seq
Reverse (-)
73559946 .. 73561307
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52587

Sequence Viewer

Length: 360 bp
ATGGCCATTGCTTTGTCAAAGACATTCAAGTCACCAGTAGTGGATACCATACAATGTCTTCCTCAACATCAACAGATTATAATGTGCTCTGCTGCAAAGCATTTCCGTGGTGTGAAGAAAGATACAACTATAGGAGAGTTAAACAAATCTTACATAGACATCTGCAAAGCAACACTAATTCCCCCGGTTGGGAGTTTTGAATTTTCAAGTATGTGCAAAGTGCTAAATGACCAGGGCCTCCTCAAACTCAGTGGCCAATCCAGAGATATAAAATCCAAGAGAGTGACATTGAATGTAGATGAAGGGGACATCACATTTGCATTGCAGGGAATCCGGTTTTTTCGGACTTGTCTTGAGTAA

Protein Analysis

119

Amino Acids

13.22

Weight (kDa)

9.08

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_Cdc6 PF09079 15 - 107 1.4e-21 CDC6, C terminal winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024847)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0157111
rosa_multiflora Rmu_sc0006282.1_g000029
rosa_samantha Rh7DG336500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
AasI GACNNNNNNGTC 1 cut(s) 28
AcoI YGGCCR 2 cut(s) 3, 253
AcsI RAATTY 1 cut(s) 200
AfiI CCNNNNNNNGG 2 cut(s) 188, 189
AgsI TTSAA 4 cut(s) 28, 200, 207, 292
AjnI CCWGG 1 cut(s) 231
Alw21I GWGCWC 1 cut(s) 89
AoxI GGCC 3 cut(s) 3, 235, 253
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 24
BalI TGGCCA 2 cut(s) 5, 255
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 233
BciVI GTATCC 1 cut(s) 37
BcnI CCSGG 1 cut(s) 185
BfmI CTRYAG 1 cut(s) 129
BfuI GTATCC 1 cut(s) 37
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
Bme1390I CCNGG 2 cut(s) 185, 233
BmgT120I GGNCC 1 cut(s) 235
BmrFI CCNGG 2 cut(s) 185, 233
BpiI GAAGAC 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 185
BsaJI CCNNGG 3 cut(s) 106, 183, 232
BsaWI WCCGGW 1 cut(s) 333
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 189
Bse1I ACTGG 1 cut(s) 35
Bse3DI GCAATG 2 cut(s) 6, 320
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 3 cut(s) 106, 183, 232
BseLI CCNNNNNNNGG 2 cut(s) 188, 189
BseMI GCAATG 2 cut(s) 6, 320
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 79
BshFI GGCC 3 cut(s) 5, 237, 255
BsiHKAI GWGCWC 1 cut(s) 89
BsiSI CCGG 2 cut(s) 185, 334
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 2 cut(s) 188, 189
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 3 cut(s) 5, 237, 255
Bsp1286I GDGCHC 1 cut(s) 89
BspANI GGCC 3 cut(s) 5, 237, 255
BspCNI CTCAG 1 cut(s) 261
BsrDI GCAATG 2 cut(s) 6, 320
BsrI ACTGG 1 cut(s) 35
BssECI CCNNGG 3 cut(s) 106, 183, 232
Bst2UI CCWGG 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 248
BstDSI CCRYGG 1 cut(s) 106
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 183, 231
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 79
BstV2I GAAGAC 1 cut(s) 50
BsuI GTATCC 1 cut(s) 37
BsuRI GGCC 3 cut(s) 5, 237, 255
BtgI CCRYGG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 235
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CviJI RGCY 3 cut(s) 5, 237, 255
CviKI_1 RGCY 3 cut(s) 5, 237, 255
DdeI CTNAG 1 cut(s) 248
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
EaeI YGGCCR 2 cut(s) 3, 253
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 231
FaiI YATR 6 cut(s) 50, 80, 131, 155, 212, 269
FaqI GGGAC 1 cut(s) 320
Fnu4HI GCNGC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 93
HaeIII GGCC 3 cut(s) 5, 237, 255
HapII CCGG 2 cut(s) 185, 334
HinfI GANTC 1 cut(s) 330
HpaII CCGG 2 cut(s) 185, 334
HphI GGTGA 1 cut(s) 24
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 2 cut(s) 261, 353
HpyAV CCTTC 1 cut(s) 296
HpyCH4V TGCA 5 cut(s) 95, 165, 216, 320, 325
HpyF3I CTNAG 1 cut(s) 248
LpnPI CCDG 7 cut(s) 48, 198, 218, 245, 274, 311, 347
Lsp1109I GCAGC 1 cut(s) 79
MaeIII GTNAC 2 cut(s) 30, 283
MboII GAAGA 2 cut(s) 50, 127
MhlI GDGCHC 1 cut(s) 89
MlsI TGGCCA 2 cut(s) 5, 255
MluCI AATT 2 cut(s) 177, 200
MluNI TGGCCA 2 cut(s) 5, 255
MnlI CCTC 3 cut(s) 72, 248, 251
Mox20I TGGCCA 2 cut(s) 5, 255
MscI TGGCCA 2 cut(s) 5, 255
MseI TTAA 1 cut(s) 140
MslI CAYNNNNRTG 1 cut(s) 105
Msp20I TGGCCA 2 cut(s) 5, 255
MspI CCGG 2 cut(s) 185, 334
MspR9I CCNGG 2 cut(s) 185, 233
MvaI CCWGG 1 cut(s) 233
NciI CCSGG 1 cut(s) 185
NmuCI GTSAC 2 cut(s) 30, 283
PfeI GAWTC 1 cut(s) 330
PkrI GCNGC 1 cut(s) 94
PsiI TTATAA 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspPI GGNCC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 235
ScrFI CCNGG 2 cut(s) 185, 233
SduI GDGCHC 1 cut(s) 89
SfcI CTRYAG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 2 cut(s) 177, 200
StyD4I CCNGG 2 cut(s) 183, 231
TasI AATT 2 cut(s) 177, 200
TfiI GAWTC 1 cut(s) 330
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 2 cut(s) 30, 283
TseI GCWGC 1 cut(s) 92
Tsp45I GTSAC 2 cut(s) 30, 283
TspDTI ATGAA 1 cut(s) 315
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 1 cut(s) 256
XapI RAATTY 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.