Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0024847

Physical Location & Seq

Genomic Coordinates Forward (+)

43836513 .. 43851859

Gene Structure 15347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG336500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAGGAAAGCTCTCTGTATTTCCAGGAGTGCAATTGAGATGCTGGAAGCAGAGTTGAGAGAATCTACTGACAAGTTAAATTCATCAACAGCAGAGAATCCATTCTCTGAGCAACAGACAGCTCCAGCTCTTGCTCTGGTGAAAAAACAGGAGATTGATATTGTGAGAATTGATCACATGGCCATTGCTTTGTCAAAGACATTCAAGTCACCAGTAGTGGATACCATACAATGTCTTCCTCAACATCAACAGATTATAATGTGCTCTGCTGCAAAGCATTTCCGTGGTGTGAAGAAAGATACAACTATAGGAGAGTTAAACAAATCTTACATAGACATCTGCAAAGCAACACTAATTCCCCCGGTTGGGAGTTTTGAATTTTCAAGTATGTGCAAAGTGCTAAATGACCAGGGCCTCCTCAAACTCAGTGGCCAATCCAGAGATATAAAATCCAAGAGAGTGACATTGAATGTAGATGAAGGGGACATCACATTTGCATTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

168

Amino Acids

18.61

Weight (kDa)

8.27

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_Cdc6	PF09079	74 - 166	4.1e-21	CDC6, C terminal winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0024847)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0157111
rosa_multiflora	Rmu_sc0006282.1_g000029
rosa_samantha	Rh7DG336500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AasI	GACNNNNNNGTC	1 cut(s)	205
AcoI	YGGCCR	2 cut(s)	180, 430
AcsI	RAATTY	2 cut(s)	79, 377
AfiI	CCNNNNNNNGG	2 cut(s)	365, 366
AgsI	TTSAA	4 cut(s)	205, 377, 384, 469
AjnI	CCWGG	2 cut(s)	23, 408
AluBI	AGCT	3 cut(s)	11, 122, 128
AluI	AGCT	3 cut(s)	11, 122, 128
Alw21I	GWGCWC	1 cut(s)	266
AoxI	GGCC	3 cut(s)	180, 412, 430
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	2 cut(s)	79, 377
ArsI	GACNNNNNNTTYG	1 cut(s)	476
Asp700I	GAANNNNTTC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	412
AsuC2I	CCSGG	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	151, 201
BalI	TGGCCA	2 cut(s)	182, 432
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	256
BciT130I	CCWGG	2 cut(s)	25, 410
BciVI	GTATCC	1 cut(s)	214
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	306
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	3 cut(s)	25, 362, 410
BmgT120I	GGNCC	1 cut(s)	412
BmrFI	CCNGG	3 cut(s)	25, 362, 410
BmsI	GCATC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	227
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	108
BpuMI	CCSGG	1 cut(s)	362
BsaJI	CCNNGG	3 cut(s)	283, 360, 409
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 366
Bse1I	ACTGG	1 cut(s)	212
Bse3DI	GCAATG	2 cut(s)	183, 497
BseBI	CCWGG	2 cut(s)	25, 410
BseDI	CCNNGG	3 cut(s)	283, 360, 409
BseLI	CCNNNNNNNGG	2 cut(s)	365, 366
BseMI	GCAATG	2 cut(s)	183, 497
BseMII	CTCAG	2 cut(s)	99, 439
BseNI	ACTGG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	1 cut(s)	256
BshFI	GGCC	3 cut(s)	182, 414, 432
BsiHKAI	GWGCWC	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	2 cut(s)	365, 366
BsmFI	GGGAC	1 cut(s)	497
BsnI	GGCC	3 cut(s)	182, 414, 432
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	172
BspANI	GGCC	3 cut(s)	182, 414, 432
BspCNI	CTCAG	2 cut(s)	100, 438
BsrDI	GCAATG	2 cut(s)	183, 497
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	3 cut(s)	283, 360, 409
BssMI	GATC	1 cut(s)	172
Bst2UI	CCWGG	2 cut(s)	25, 410
BstDEI	CTNAG	2 cut(s)	108, 425
BstDSI	CCRYGG	1 cut(s)	283
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstNI	CCWGG	2 cut(s)	25, 410
BstSCI	CCNGG	3 cut(s)	23, 360, 408
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	227
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	3 cut(s)	182, 414, 432
BtgI	CCRYGG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	412
CspCI	CAANNNNNGTGG	2 cut(s)	409, 444
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	6 cut(s)	11, 122, 128, 182, 414, 432
CviKI_1	RGCY	6 cut(s)	11, 122, 128, 182, 414, 432
DdeI	CTNAG	2 cut(s)	108, 425
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
DrdI	GACNNNNNNGTC	1 cut(s)	205
DseDI	GACNNNNNNGTC	1 cut(s)	205
EaeI	YGGCCR	2 cut(s)	180, 430
EcoO109I	RGGNCCY	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	23, 408
FaeI	CATG	1 cut(s)	181
FaiI	YATR	7 cut(s)	179, 227, 257, 308, 332, 389, 446
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	182, 414, 432
HapII	CCGG	1 cut(s)	362
Hin1II	CATG	1 cut(s)	181
HinfI	GANTC	2 cut(s)	62, 97
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	2 cut(s)	151, 201
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	438
HpyAV	CCTTC	1 cut(s)	473
HpyCH4V	TGCA	6 cut(s)	32, 272, 342, 393, 497, 502
HpyF3I	CTNAG	2 cut(s)	108, 425
Hsp92II	CATG	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	127
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	207, 460
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	2 cut(s)	227, 304
MfeI	CAATTG	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	266
MlsI	TGGCCA	2 cut(s)	182, 432
MluCI	AATT	5 cut(s)	33, 79, 168, 354, 377
MluNI	TGGCCA	2 cut(s)	182, 432
MnlI	CCTC	3 cut(s)	249, 425, 428
Mox20I	TGGCCA	2 cut(s)	182, 432
MroXI	GAANNNNTTC	1 cut(s)	101
MscI	TGGCCA	2 cut(s)	182, 432
MseI	TTAA	2 cut(s)	77, 317
MslI	CAYNNNNRTG	1 cut(s)	282
Msp20I	TGGCCA	2 cut(s)	182, 432
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	3 cut(s)	25, 362, 410
MunI	CAATTG	1 cut(s)	33
MvaI	CCWGG	2 cut(s)	25, 410
NciI	CCSGG	1 cut(s)	362
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	181
NmuCI	GTSAC	2 cut(s)	207, 460
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	62, 97
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	271
PsiI	TTATAA	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	23, 408
PspGI	CCWGG	2 cut(s)	23, 408
PspPI	GGNCC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	77, 317
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	412
ScrFI	CCNGG	3 cut(s)	25, 362, 410
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	3 cut(s)	13, 124, 130
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	282
Sse9I	AATT	5 cut(s)	33, 79, 168, 354, 377
StyD4I	CCNGG	3 cut(s)	23, 360, 408
TasI	AATT	5 cut(s)	33, 79, 168, 354, 377
TfiI	GAWTC	2 cut(s)	62, 97
Tru1I	TTAA	2 cut(s)	77, 317
Tru9I	TTAA	2 cut(s)	77, 317
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	2 cut(s)	207, 460
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	2 cut(s)	207, 460
TspDTI	ATGAA	2 cut(s)	72, 492
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	433
XapI	RAATTY	2 cut(s)	79, 377
XmnI	GAANNNNTTC	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.