RchiOBHm_Chr2g0160991

Protein NRT1 PTR FAMILY 4.3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0024802
Physical Location & Seq
Reverse (-)
76863158 .. 76866733
3576 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52937

Sequence Viewer

Length: 606 bp
ATGCTTGCTAAGGTTGGAGTTCATCACTACAATGGAACTGCTGCGTTTGTTCTTGGGCTTCAATCATTTGAGATAATGGCAATCGCGGCAGTTGGGAACAACCTGATAACATATGTGATAAATGAGATGCACTTCTCATTATCCAAGTCTGCCAACATAGTGACAAACTTCATTGGAACCGTCTTTCTCTTGGCCCTTGTTGGTGGCTACCTCTCCGATTCTTATCTTGGGAGTTTCTGGACCATGCTTATCTTTGGCTTTGTTGAACTTTCGGGTTTCATATTATTGTCAGTCCAAGCTCATCTTCCGCAGCTAAAGCCACCACCATGCAACAGCAACACAGCTGTTGGAGAAGACTACTGTGAAGAAGCAAAAGGGTTCAAGGCATTGATCTTTTTCGTAGCTCTCTACTTGGTGGCATTAGGGAGTGGGTGTGTCAAACCCAACATGATTGCTCATGGAGCTGACCAGTTCAACCCTGCAGATAACCCAAAACAATCCAAGAAACTCTCCACCTACTTCAATGCTGCTTATTTTGCCTTCTCCGTGGGAGAACTCATCGCCCTCACGCTTCTTGTTTGGGTCCAAACTCACCAGTTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

201

Amino Acids

21.86

Weight (kDa)

6.27

Isoelectric Point (pI)

18.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 79 - 198 1e-21 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024802)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0160991
rosa_multiflora Rmu_co8286699.1_g000001
rosa_wichuraiana Rw3G020570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 86
AciI CCGC 2 cut(s) 86, 308
AgsI TTSAA 5 cut(s) 62, 266, 382, 475, 523
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 5 cut(s) 299, 313, 344, 404, 464
AluI AGCT 5 cut(s) 299, 313, 344, 404, 464
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 3 cut(s) 41, 310, 527
AspS9I GGNCC 3 cut(s) 193, 240, 583
AsuHPI GGTGA 1 cut(s) 584
AvaII GGWCC 2 cut(s) 240, 583
BbsI GAAGAC 1 cut(s) 360
BbvI GCAGC 3 cut(s) 28, 322, 514
BfaI CTAG 1 cut(s) 604
BfmI CTRYAG 1 cut(s) 480
BisI GCNGC 4 cut(s) 42, 87, 311, 528
BlsI GCNGC 4 cut(s) 43, 88, 312, 529
Bme18I GGWCC 2 cut(s) 240, 583
BmgT120I GGNCC 3 cut(s) 193, 240, 583
BmiI GGNNCC 2 cut(s) 178, 584
BmsI GCATC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 360
Bpu10I CCTNAGC 1 cut(s) 9
BsaBI GATNNNNATC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 546
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bse1I ACTGG 2 cut(s) 469, 595
Bse8I GATNNNNATC 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 546
BseJI GATNNNNATC 1 cut(s) 222
BseNI ACTGG 2 cut(s) 469, 595
BseXI GCAGC 3 cut(s) 28, 322, 514
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 1 cut(s) 194
BsnI GGCC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 390
BspACI CCGC 2 cut(s) 86, 308
BspANI GGCC 1 cut(s) 194
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 178, 584
BspMAI CTGCAG 1 cut(s) 484
BsrI ACTGG 2 cut(s) 469, 595
BssECI CCNNGG 1 cut(s) 546
BssMI GATC 1 cut(s) 390
Bst4CI ACNGT 2 cut(s) 181, 362
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 9
BstDSI CCRYGG 1 cut(s) 546
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 1 cut(s) 393
BstMBI GATC 1 cut(s) 390
BstMWI GCNNNNNNNGC 4 cut(s) 86, 316, 461, 536
BstSFI CTRYAG 1 cut(s) 480
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 3 cut(s) 28, 322, 514
BstV2I GAAGAC 1 cut(s) 360
BsuRI GGCC 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 546
BtgZI GCGATG 1 cut(s) 544
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 3 cut(s) 193, 240, 583
CviAII CATG 4 cut(s) 244, 327, 448, 458
DdeI CTNAG 1 cut(s) 9
DpnI GATC 1 cut(s) 392
DpnII GATC 1 cut(s) 390
Eco47I GGWCC 2 cut(s) 240, 583
FaeI CATG 4 cut(s) 247, 330, 451, 461
FaiI YATR 8 cut(s) 112, 114, 158, 245, 281, 328, 449, 459
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FatI CATG 4 cut(s) 243, 326, 447, 457
FauNDI CATATG 1 cut(s) 112
Fnu4HI GCNGC 4 cut(s) 42, 87, 311, 528
Fsp4HI GCNGC 4 cut(s) 42, 87, 311, 528
FspBI CTAG 1 cut(s) 604
GluI GCNGC 4 cut(s) 42, 87, 311, 528
HaeIII GGCC 1 cut(s) 194
Hin1II CATG 4 cut(s) 247, 330, 451, 461
HinfI GANTC 1 cut(s) 218
HphI GGTGA 1 cut(s) 584
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 550
HpyCH4III ACNGT 2 cut(s) 181, 362
HpyCH4V TGCA 3 cut(s) 130, 330, 482
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 316, 461, 536
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 4 cut(s) 247, 330, 451, 461
Kzo9I GATC 1 cut(s) 390
LmnI GCTCC 1 cut(s) 461
LpnPI CCDG 4 cut(s) 116, 223, 482, 492
Lsp1109I GCAGC 3 cut(s) 28, 322, 514
LweI GCATC 1 cut(s) 117
MaeI CTAG 1 cut(s) 604
MaeIII GTNAC 1 cut(s) 160
MalI GATC 1 cut(s) 392
MboI GATC 1 cut(s) 390
MboII GAAGA 3 cut(s) 296, 365, 377
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 2 cut(s) 221, 575
MslI CAYNNNNRTG 2 cut(s) 30, 325
MspA1I CMGCKG 1 cut(s) 344
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 4 cut(s) 86, 316, 461, 536
NdeI CATATG 1 cut(s) 112
NdeII GATC 1 cut(s) 390
NlaIII CATG 4 cut(s) 247, 330, 451, 461
NlaIV GGNNCC 2 cut(s) 178, 584
NmuCI GTSAC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 4 cut(s) 43, 88, 312, 529
PspN4I GGNNCC 2 cut(s) 178, 584
PspPI GGNCC 3 cut(s) 193, 240, 583
PstI CTGCAG 1 cut(s) 484
PvuII CAGCTG 1 cut(s) 344
RseI CAYNNNNRTG 2 cut(s) 30, 325
SatI GCNGC 4 cut(s) 42, 87, 311, 528
Sau3AI GATC 1 cut(s) 390
Sau96I GGNCC 3 cut(s) 193, 240, 583
SetI ASST 9 cut(s) 15, 105, 213, 301, 315, 346, 406, 466, 518
SfaNI GCATC 1 cut(s) 117
SfcI CTRYAG 1 cut(s) 480
SinI GGWCC 2 cut(s) 240, 583
SmiMI CAYNNNNRTG 2 cut(s) 30, 325
SsiI CCGC 2 cut(s) 86, 308
SspMI CTAG 1 cut(s) 604
TaaI ACNGT 2 cut(s) 181, 362
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 218
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 3 cut(s) 41, 310, 527
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 11, 160, 268
TspGWI ACGGA 1 cut(s) 535
VpaK11BI GGWCC 2 cut(s) 240, 583
XspI CTAG 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.