Rw3G020570

Protein NRT1 PTR FAMILY 4.3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0024802
Physical Location & Seq
Reverse (-)
24175525 .. 24176581
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G020570.1

Sequence Viewer

Length: 531 bp
ATGGCAATCGCGGCAGTTGGGAACAACCTGATAACATATGTGATAAATGAGATGCACTTCTCATTATCCAAGTCTGCCAACATAGTGACAAACTTCATTGGAACCGTCTTTCTCTTGGCCCTTGTTGGTGGCTACCTCTCCGATTCTTATCTTGGGAGTTTCTGGACCATGCTTATCTTTGGCTTTGTTGAACTTTCGGGTTTCATATTATTGTCAGTCCAAGCTCATCTTCCGCAGCTAAAGCCACCACCATGCAACAGCAACACAGCTGTTGGAGAAGACTACTGTGAAGAAGCAAAAGGGTTCAAGGCATTGATCTTTTTCGTAGCTCTCTACTTGGTGGCATTAGGGAGTGGGTGTGTCAAACCCAACATGATTGCTCATGGAGCTGACCAGTTCAACCCTGCAGATAACCCAAAACAATCCAAGAAACTCTCCACCTACTTCAATGCTGCTTATTTTGCCTTCTCCGTGGGAGAACTCATCGCCCTCACGCTTCTTGTTTGGGTCCAAACTCACCAGTTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

176

Amino Acids

19.17

Weight (kDa)

6.02

Isoelectric Point (pI)

13.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 54 - 173 7e-22 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024802)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0160991
rosa_multiflora Rmu_co8286699.1_g000001
rosa_wichuraiana Rw3G020570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 11
AciI CCGC 2 cut(s) 11, 233
AgsI TTSAA 4 cut(s) 191, 307, 400, 448
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
AluBI AGCT 5 cut(s) 224, 238, 269, 329, 389
AluI AGCT 5 cut(s) 224, 238, 269, 329, 389
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 2 cut(s) 235, 452
AspS9I GGNCC 3 cut(s) 118, 165, 508
AsuHPI GGTGA 1 cut(s) 509
AvaII GGWCC 2 cut(s) 165, 508
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 247, 439
BfaI CTAG 1 cut(s) 529
BfmI CTRYAG 1 cut(s) 405
BisI GCNGC 3 cut(s) 12, 236, 453
BlsI GCNGC 3 cut(s) 13, 237, 454
Bme18I GGWCC 2 cut(s) 165, 508
BmgT120I GGNCC 3 cut(s) 118, 165, 508
BmiI GGNNCC 2 cut(s) 103, 509
BmsI GCATC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 285
BsaBI GATNNNNATC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 471
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bse1I ACTGG 2 cut(s) 394, 520
Bse8I GATNNNNATC 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 471
BseJI GATNNNNATC 1 cut(s) 147
BseNI ACTGG 2 cut(s) 394, 520
BseXI GCAGC 2 cut(s) 247, 439
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 1 cut(s) 119
BsnI GGCC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 2 cut(s) 11, 233
BspANI GGCC 1 cut(s) 119
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 2 cut(s) 103, 509
BspMAI CTGCAG 1 cut(s) 409
BsrI ACTGG 2 cut(s) 394, 520
BssECI CCNNGG 1 cut(s) 471
BssMI GATC 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 106, 287
BstDSI CCRYGG 1 cut(s) 471
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 1 cut(s) 318
BstMBI GATC 1 cut(s) 315
BstMWI GCNNNNNNNGC 4 cut(s) 11, 241, 386, 461
BstSFI CTRYAG 1 cut(s) 405
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 247, 439
BstV2I GAAGAC 1 cut(s) 285
BsuRI GGCC 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 471
BtgZI GCGATG 1 cut(s) 469
Cfr13I GGNCC 3 cut(s) 118, 165, 508
CviAII CATG 4 cut(s) 169, 252, 373, 383
CviJI RGCY 9 cut(s) 119, 132, 183, 224, 238, 244, 269, 329, 389
CviKI_1 RGCY 9 cut(s) 119, 132, 183, 224, 238, 244, 269, 329, 389
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
Eco47I GGWCC 2 cut(s) 165, 508
FaeI CATG 4 cut(s) 172, 255, 376, 386
FaiI YATR 8 cut(s) 37, 39, 83, 170, 206, 253, 374, 384
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FatI CATG 4 cut(s) 168, 251, 372, 382
FauNDI CATATG 1 cut(s) 37
Fnu4HI GCNGC 3 cut(s) 12, 236, 453
Fsp4HI GCNGC 3 cut(s) 12, 236, 453
FspBI CTAG 1 cut(s) 529
GluI GCNGC 3 cut(s) 12, 236, 453
HaeIII GGCC 1 cut(s) 119
Hin1II CATG 4 cut(s) 172, 255, 376, 386
HinfI GANTC 1 cut(s) 143
HphI GGTGA 1 cut(s) 509
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 2 cut(s) 106, 287
HpyCH4V TGCA 3 cut(s) 55, 255, 407
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 241, 386, 461
Hsp92II CATG 4 cut(s) 172, 255, 376, 386
Kzo9I GATC 1 cut(s) 315
LmnI GCTCC 1 cut(s) 386
LpnPI CCDG 4 cut(s) 41, 148, 407, 417
Lsp1109I GCAGC 2 cut(s) 247, 439
LweI GCATC 1 cut(s) 42
MaeI CTAG 1 cut(s) 529
MaeIII GTNAC 1 cut(s) 85
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 3 cut(s) 221, 290, 302
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 2 cut(s) 146, 500
MslI CAYNNNNRTG 1 cut(s) 250
MspA1I CMGCKG 1 cut(s) 269
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 4 cut(s) 11, 241, 386, 461
NdeI CATATG 1 cut(s) 37
NdeII GATC 1 cut(s) 315
NlaIII CATG 4 cut(s) 172, 255, 376, 386
NlaIV GGNNCC 2 cut(s) 103, 509
NmuCI GTSAC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 3 cut(s) 13, 237, 454
PspN4I GGNNCC 2 cut(s) 103, 509
PspPI GGNCC 3 cut(s) 118, 165, 508
PstI CTGCAG 1 cut(s) 409
PvuII CAGCTG 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 250
SatI GCNGC 3 cut(s) 12, 236, 453
Sau3AI GATC 1 cut(s) 315
Sau96I GGNCC 3 cut(s) 118, 165, 508
SetI ASST 8 cut(s) 30, 138, 226, 240, 271, 331, 391, 443
SfaNI GCATC 1 cut(s) 42
SfcI CTRYAG 1 cut(s) 405
SinI GGWCC 2 cut(s) 165, 508
SmiMI CAYNNNNRTG 1 cut(s) 250
SsiI CCGC 2 cut(s) 11, 233
SspMI CTAG 1 cut(s) 529
TaaI ACNGT 2 cut(s) 106, 287
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 143
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 2 cut(s) 235, 452
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 85, 193
TspGWI ACGGA 1 cut(s) 460
VpaK11BI GGWCC 2 cut(s) 165, 508
XspI CTAG 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.