RchiOBHm_Chr2g0168961

PQQ enzyme repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029892
Physical Location & Seq
Forward (+)
83267447 .. 83268114
668 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53659

Sequence Viewer

Length: 480 bp
ATGCTTGCACTTGATATCGATCGACTCTGGCAATATCAAGTGGGCAAGTGGTACCGTCAGTTGGGCGGCTATGATGTGTGGTTCGTACAATGTTTCCTCAATGCCTCAACTTGCCCTCCCGGACCAAATGTGGATGCTGATTTTGGTGAAGCACCGATGATGCTTAGTGCACAAGTCAATGGGAGCAAGCTGGATATAGTGGAAGCAGGGCCTGGTGGTCTTGGCGGAGGAGGAACCTGGGGGGCAGCTACTGATAAGAAAAGAGTATACACGAATATTGGCTACTCGGATCACAAAAATTTCACTCTCAAACCATCAAATAATATAACAACCGCCGGGGGATGGGTTGCAATTAATCCTCGCAATGGGAAAGTCCTATGGACGACGGCTAATCCCAGCGATGGAACTTCTCCGGGGCCTGTTAGTGTGGCTAACGGTGTCTTATTTGCTGGATCGACAAGCCAACGAGGACCGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PQQ PQQ_2 PQQ_3

Protein Analysis

159

Amino Acids

16.82

Weight (kDa)

7.75

Isoelectric Point (pI)

18.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029892)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0168961
rosa_samantha Rh2CG588800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 51
AccI GTMKAC 1 cut(s) 267
AciI CCGC 3 cut(s) 66, 225, 333
AclWI GGATC 2 cut(s) 297, 460
AcsI RAATTY 1 cut(s) 298
AfaI GTAC 2 cut(s) 53, 87
AfiI CCNNNNNNNGG 4 cut(s) 61, 342, 365, 401
AjnI CCWGG 2 cut(s) 211, 236
AluBI AGCT 2 cut(s) 190, 248
AluI AGCT 2 cut(s) 190, 248
Alw21I GWGCWC 1 cut(s) 172
Alw44I GTGCAC 1 cut(s) 168
AlwI GGATC 2 cut(s) 297, 460
AlwNI CAGNNNCTG 2 cut(s) 212, 251
AoxI GGCC 2 cut(s) 209, 416
ApaLI GTGCAC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 298
AseI ATTAAT 1 cut(s) 354
Asp718I GGTACC 1 cut(s) 51
AspS9I GGNCC 4 cut(s) 122, 209, 416, 470
AsuC2I CCSGG 3 cut(s) 120, 337, 414
AsuHPI GGTGA 1 cut(s) 158
AvaII GGWCC 2 cut(s) 122, 470
BaeGI GKGCMC 1 cut(s) 172
BanI GGYRCC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 257
BccI CCATC 3 cut(s) 322, 336, 395
BceAI ACGGC 1 cut(s) 402
BciT130I CCWGG 2 cut(s) 213, 238
BcnI CCSGG 3 cut(s) 120, 337, 414
BisI GCNGC 2 cut(s) 67, 246
BlsI GCNGC 2 cut(s) 68, 247
Bme1390I CCNGG 5 cut(s) 120, 213, 238, 337, 414
Bme18I GGWCC 2 cut(s) 122, 470
BmgT120I GGNCC 4 cut(s) 122, 209, 416, 470
BmiI GGNNCC 3 cut(s) 53, 235, 417
BmrFI CCNGG 5 cut(s) 120, 213, 238, 337, 414
BmsI GCATC 2 cut(s) 124, 150
BpuMI CCSGG 3 cut(s) 120, 337, 414
Bsa29I ATCGAT 1 cut(s) 18
BsaBI GATNNNNATC 1 cut(s) 18
BsaJI CCNNGG 3 cut(s) 237, 336, 413
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 342, 365, 401
Bse3DI GCAATG 1 cut(s) 370
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 2 cut(s) 213, 238
BseCI ATCGAT 1 cut(s) 18
BseDI CCNNGG 3 cut(s) 237, 336, 413
BseGI GGATG 2 cut(s) 139, 347
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 4 cut(s) 61, 342, 365, 401
BseMI GCAATG 1 cut(s) 370
BseRI GAGGAG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 1 cut(s) 257
BseYI CCCAGC 1 cut(s) 395
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 2 cut(s) 211, 418
BshNI GGYRCC 1 cut(s) 51
BshVI ATCGAT 1 cut(s) 18
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 172
BsiSI CCGG 3 cut(s) 120, 336, 413
BslI CCNNNNNNNGG 4 cut(s) 61, 342, 365, 401
BsnI GGCC 2 cut(s) 211, 418
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 3 cut(s) 19, 289, 452
BspACI CCGC 3 cut(s) 66, 225, 333
BspANI GGCC 2 cut(s) 211, 418
BspDI ATCGAT 1 cut(s) 18
BspLI GGNNCC 3 cut(s) 53, 235, 417
BspPI GGATC 2 cut(s) 297, 460
BspT107I GGYRCC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 370
BssECI CCNNGG 3 cut(s) 237, 336, 413
BssMI GATC 3 cut(s) 19, 289, 452
BssNAI GTATAC 1 cut(s) 268
Bst1107I GTATAC 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 213, 238
Bst4CI ACNGT 2 cut(s) 56, 437
BstC8I GCNNGC 2 cut(s) 6, 188
BstDEI CTNAG 1 cut(s) 164
BstF5I GGATG 2 cut(s) 139, 347
BstKTI GATC 3 cut(s) 22, 292, 455
BstMBI GATC 3 cut(s) 19, 289, 452
BstMCI CGRYCG 1 cut(s) 22
BstNI CCWGG 2 cut(s) 213, 238
BstSCI CCNGG 5 cut(s) 118, 211, 236, 335, 412
BstSLI GKGCMC 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 257
BstZ17I GTATAC 1 cut(s) 268
Bsu15I ATCGAT 1 cut(s) 18
BsuRI GGCC 2 cut(s) 211, 418
BsuTUI ATCGAT 1 cut(s) 18
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 2 cut(s) 139, 347
Cac8I GCNNGC 2 cut(s) 6, 188
CaiI CAGNNNCTG 2 cut(s) 212, 251
Cfr13I GGNCC 4 cut(s) 122, 209, 416, 470
ClaI ATCGAT 1 cut(s) 18
Csp6I GTAC 2 cut(s) 52, 86
CviJI RGCY 9 cut(s) 69, 190, 211, 248, 282, 389, 418, 431, 462
CviKI_1 RGCY 9 cut(s) 69, 190, 211, 248, 282, 389, 418, 431, 462
CviQI GTAC 2 cut(s) 52, 86
DdeI CTNAG 1 cut(s) 164
DpnI GATC 3 cut(s) 21, 291, 454
DpnII GATC 3 cut(s) 19, 289, 452
EciI GGCGGA 1 cut(s) 240
Eco32I GATATC 1 cut(s) 16
Eco47I GGWCC 2 cut(s) 122, 470
EcoO109I RGGNCCY 2 cut(s) 209, 416
EcoRII CCWGG 2 cut(s) 211, 236
EcoRV GATATC 1 cut(s) 16
FaiI YATR 6 cut(s) 72, 197, 268, 326, 379, 478
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 67, 246
FokI GGATG 2 cut(s) 146, 354
Fsp4HI GCNGC 2 cut(s) 67, 246
GluI GCNGC 2 cut(s) 67, 246
GsaI CCCAGC 1 cut(s) 399
HaeIII GGCC 2 cut(s) 211, 418
HapII CCGG 3 cut(s) 120, 336, 413
HinfI GANTC 1 cut(s) 24
HpaII CCGG 3 cut(s) 120, 336, 413
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 170, 268
Hpy188I TCNGA 1 cut(s) 289
Hpy8I GTNNAC 2 cut(s) 170, 268
Hpy99I CGWCG 1 cut(s) 388
HpyCH4III ACNGT 2 cut(s) 56, 437
HpyCH4V TGCA 3 cut(s) 8, 170, 350
HpyF3I CTNAG 1 cut(s) 164
KpnI GGTACC 1 cut(s) 55
Kzo9I GATC 3 cut(s) 19, 289, 452
LmnI GCTCC 1 cut(s) 183
Lsp1109I GCAGC 1 cut(s) 257
LweI GCATC 2 cut(s) 124, 150
MalI GATC 3 cut(s) 21, 291, 454
MboI GATC 3 cut(s) 19, 289, 452
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 2 cut(s) 298, 351
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 7 cut(s) 107, 115, 126, 221, 224, 369, 461
MseI TTAA 1 cut(s) 354
MspI CCGG 3 cut(s) 120, 336, 413
MspR9I CCNGG 5 cut(s) 120, 213, 238, 337, 414
MvaI CCWGG 2 cut(s) 213, 238
NciI CCSGG 3 cut(s) 120, 337, 414
NdeII GATC 3 cut(s) 19, 289, 452
NlaIV GGNNCC 3 cut(s) 53, 235, 417
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 2 cut(s) 68, 247
Ple19I CGATCG 1 cut(s) 22
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PshBI ATTAAT 1 cut(s) 354
Psp6I CCWGG 2 cut(s) 211, 236
PspFI CCCAGC 1 cut(s) 395
PspGI CCWGG 2 cut(s) 211, 236
PspN4I GGNNCC 3 cut(s) 53, 235, 417
PspPI GGNCC 4 cut(s) 122, 209, 416, 470
PstNI CAGNNNCTG 2 cut(s) 212, 251
PvuI CGATCG 1 cut(s) 22
RsaI GTAC 2 cut(s) 53, 87
RsaNI GTAC 2 cut(s) 52, 86
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 2 cut(s) 67, 246
Sau3AI GATC 3 cut(s) 19, 289, 452
Sau96I GGNCC 4 cut(s) 122, 209, 416, 470
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 5 cut(s) 120, 213, 238, 337, 414
SduI GDGCHC 1 cut(s) 172
SetI ASST 3 cut(s) 192, 239, 250
SfaNI GCATC 2 cut(s) 124, 150
SinI GGWCC 2 cut(s) 122, 470
Sse9I AATT 2 cut(s) 298, 351
SsiI CCGC 3 cut(s) 66, 225, 333
SspI AATATT 1 cut(s) 277
StyD4I CCNGG 5 cut(s) 118, 211, 236, 335, 412
TaaI ACNGT 2 cut(s) 56, 437
TaqI TCGA 3 cut(s) 18, 22, 455
TasI AATT 2 cut(s) 298, 351
TauI GCSGC 1 cut(s) 69
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TseI GCWGC 1 cut(s) 245
VneI GTGCAC 1 cut(s) 168
VpaK11BI GGWCC 2 cut(s) 122, 470
VspI ATTAAT 1 cut(s) 354
XapI RAATTY 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.