Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029737

Physical Location & Seq

Genomic Coordinates Reverse (-)

84109343 .. 84111137

Gene Structure 1795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53766

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCCTCTGATTTTCGTCTCTTATAGTTATGGTTTGGGAGCTGCAGTGATTTCTAAGGATCCAGAAAGGTGTGAACGCTTCGCCAAGGCTATTCAGTCAGGGGTTGTATGGAAAAACTGCTCACAACCCTGCTTTAATGAAGCCCCTTGGGGAGGCAAAAAGCTCAGCGGAATTGGGCGCGAGTTAGGAGAATGTTATGGTTTGGGAGCTGCAGTGATTTCTAAGGATCCAGAAAGGTGTGAACGCTTCGCCAAGGCTATTCAATCAGGGGTTGTATGGAAAAACTGCTCACAACCCTGCTTTAATGAAGCCCCTTGGGGAGGCAAAAAGCTCAGCGGAATTGGGCGCGAGTTAGGAGAATGGTATGAGTCTCTAACACATTTATTTGTATGCAAATCAGAAGTTTCAAGACCTTTGGATGAATTTTATGACTTGTTGCTGAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008802 GO:0009414 GO:0009415 GO:0009507 GO:0009516 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0016491 GO:0016620 GO:0016903 GO:0030312 GO:0033554 GO:0034059 GO:0036293 GO:0036294 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070482 GO:0070887 GO:0071453 GO:0071454 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 map00260 map01100

Pfam Domains

Protein Families

Aldedh

Protein Analysis

149

Amino Acids

16.52

Weight (kDa)

7.49

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	9 - 64	4.4e-12	Aldehyde dehydrogenase family
Aldedh	PF00171	66 - 122	1.3e-12	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029737)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0170101
rosa_multiflora	Rmu_co8181970.1_g000001

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	180, 348
AciI	CCGC	2 cut(s)	168, 336
AclWI	GGATC	4 cut(s)	53, 66, 221, 234
AcsI	RAATTY	1 cut(s)	422
AfiI	CCNNNNNNNGG	2 cut(s)	152, 320
AgsI	TTSAA	2 cut(s)	263, 408
AluBI	AGCT	4 cut(s)	41, 163, 209, 331
AluI	AGCT	4 cut(s)	41, 163, 209, 331
Alw26I	GTCTC	2 cut(s)	22, 375
AlwI	GGATC	4 cut(s)	53, 66, 221, 234
ApeKI	GCWGC	2 cut(s)	41, 209
ApoI	RAATTY	1 cut(s)	422
AspLEI	GCGC	2 cut(s)	180, 348
BamHI	GGATCC	2 cut(s)	58, 226
BbvI	GCAGC	2 cut(s)	28, 196
BcoDI	GTCTC	2 cut(s)	22, 375
BfmI	CTRYAG	2 cut(s)	42, 210
BisI	GCNGC	2 cut(s)	42, 210
BlpI	GCTNAGC	2 cut(s)	164, 332
BlsI	GCNGC	2 cut(s)	43, 211
BmiI	GGNNCC	2 cut(s)	60, 228
Bpu1102I	GCTNAGC	2 cut(s)	164, 332
BsaJI	CCNNGG	4 cut(s)	84, 146, 252, 314
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 198, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 320
BseDI	CCNNGG	4 cut(s)	84, 146, 252, 314
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	2 cut(s)	152, 320
BseMII	CTCAG	2 cut(s)	178, 346
BseXI	GCAGC	2 cut(s)	28, 196
Bsh1236I	CGCG	2 cut(s)	180, 348
BslI	CCNNNNNNNGG	2 cut(s)	152, 320
BsmAI	GTCTC	2 cut(s)	22, 375
BsmBI	CGTCTC	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	58, 226
Bsp1720I	GCTNAGC	2 cut(s)	164, 332
BspACI	CCGC	2 cut(s)	168, 336
BspCNI	CTCAG	2 cut(s)	177, 345
BspFNI	CGCG	2 cut(s)	180, 348
BspLI	GGNNCC	2 cut(s)	60, 228
BspMAI	CTGCAG	2 cut(s)	46, 214
BspPI	GGATC	4 cut(s)	53, 66, 221, 234
BssECI	CCNNGG	4 cut(s)	84, 146, 252, 314
BssMI	GATC	2 cut(s)	58, 226
BssT1I	CCWWGG	4 cut(s)	84, 146, 252, 314
BstDEI	CTNAG	4 cut(s)	54, 164, 222, 332
BstENI	CCTNNNNNAGG	2 cut(s)	150, 318
BstF5I	GGATG	1 cut(s)	424
BstFNI	CGCG	2 cut(s)	180, 348
BstHHI	GCGC	2 cut(s)	180, 348
BstKTI	GATC	2 cut(s)	61, 229
BstMAI	GTCTC	2 cut(s)	22, 375
BstMBI	GATC	2 cut(s)	58, 226
BstSFI	CTRYAG	2 cut(s)	42, 210
BstUI	CGCG	2 cut(s)	180, 348
BstV1I	GCAGC	2 cut(s)	28, 196
BstX2I	RGATCY	2 cut(s)	58, 226
BstYI	RGATCY	2 cut(s)	58, 226
BtsCI	GGATG	1 cut(s)	424
BtsI	GCAGTG	2 cut(s)	51, 219
BtsIMutI	CAGTG	2 cut(s)	51, 219
CfoI	GCGC	2 cut(s)	180, 348
CviJI	RGCY	8 cut(s)	41, 89, 143, 163, 209, 257, 311, 331
CviKI_1	RGCY	8 cut(s)	41, 89, 143, 163, 209, 257, 311, 331
DdeI	CTNAG	4 cut(s)	54, 164, 222, 332
DpnI	GATC	2 cut(s)	60, 228
DpnII	GATC	2 cut(s)	58, 226
Eco130I	CCWWGG	4 cut(s)	84, 146, 252, 314
EcoNI	CCTNNNNNAGG	2 cut(s)	150, 318
EcoT14I	CCWWGG	4 cut(s)	84, 146, 252, 314
ErhI	CCWWGG	4 cut(s)	84, 146, 252, 314
Esp3I	CGTCTC	1 cut(s)	22
FaiI	YATR	8 cut(s)	24, 30, 109, 198, 277, 366, 391, 429
Fnu4HI	GCNGC	2 cut(s)	42, 210
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	2 cut(s)	42, 210
GlaI	GCGC	2 cut(s)	179, 347
GluI	GCNGC	2 cut(s)	42, 210
HhaI	GCGC	2 cut(s)	180, 348
Hin6I	GCGC	2 cut(s)	178, 346
HinP1I	GCGC	2 cut(s)	178, 346
HinfI	GANTC	1 cut(s)	368
Hpy166II	GTNNAC	2 cut(s)	74, 242
Hpy188I	TCNGA	2 cut(s)	9, 400
Hpy188III	TCNNGA	3 cut(s)	62, 230, 408
Hpy8I	GTNNAC	2 cut(s)	74, 242
HpyCH4V	TGCA	3 cut(s)	44, 212, 393
HpyF3I	CTNAG	4 cut(s)	54, 164, 222, 332
HspAI	GCGC	2 cut(s)	178, 346
Kzo9I	GATC	2 cut(s)	58, 226
LmnI	GCTCC	2 cut(s)	38, 206
LpnPI	CCDG	6 cut(s)	75, 84, 142, 243, 252, 310
Lsp1109I	GCAGC	2 cut(s)	28, 196
MalI	GATC	2 cut(s)	60, 228
MboI	GATC	2 cut(s)	58, 226
MflI	RGATCY	2 cut(s)	58, 226
MluCI	AATT	3 cut(s)	171, 339, 422
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	3 cut(s)	15, 146, 314
MseI	TTAA	2 cut(s)	135, 303
MspA1I	CMGCKG	2 cut(s)	168, 336
MvnI	CGCG	2 cut(s)	180, 348
NdeII	GATC	2 cut(s)	58, 226
NlaIV	GGNNCC	2 cut(s)	60, 228
PkrI	GCNGC	2 cut(s)	43, 211
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	60, 228
PstI	CTGCAG	2 cut(s)	46, 214
PsuI	RGATCY	2 cut(s)	58, 226
SaqAI	TTAA	2 cut(s)	135, 303
SatI	GCNGC	2 cut(s)	42, 210
Sau3AI	GATC	2 cut(s)	58, 226
SchI	GAGTC	1 cut(s)	377
SetI	ASST	7 cut(s)	43, 71, 165, 211, 239, 333, 415
SfcI	CTRYAG	2 cut(s)	42, 210
Sse9I	AATT	3 cut(s)	171, 339, 422
SsiI	CCGC	2 cut(s)	168, 336
StyI	CCWWGG	4 cut(s)	84, 146, 252, 314
TasI	AATT	3 cut(s)	171, 339, 422
Tru1I	TTAA	2 cut(s)	135, 303
Tru9I	TTAA	2 cut(s)	135, 303
TscAI	CASTG	2 cut(s)	51, 219
TseI	GCWGC	2 cut(s)	41, 209
TspDTI	ATGAA	3 cut(s)	153, 321, 435
TspRI	CASTG	2 cut(s)	51, 219
XagI	CCTNNNNNAGG	2 cut(s)	150, 318
XapI	RAATTY	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.