Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8181970.1

Orthogroup ID

OG0029737

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 589

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8181970.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 239 bp

tgatttctaaggatccagaaaggtgtgaacgcttcgccaaggctattcagtcaggggttgtatggaaaaactgctcacaaccctgctttaatgaagccccttggggaggcaaaaagctcagcggaattgggcgcgagttaggagaatggggtctggaaaactacttgagcataaagcaggtgactgagtacacctctgatgagccatacgggtggtattcccctcccaagaagcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008802 GO:0009414 GO:0009415 GO:0009507 GO:0009516 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0016491 GO:0016620 GO:0016903 GO:0030312 GO:0033554 GO:0034059 GO:0036293 GO:0036294 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070482 GO:0070887 GO:0071453 GO:0071454 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 map00260 map01100

Pfam Domains

Protein Families

Aldedh

Protein Analysis

78

Amino Acids

8.9

Weight (kDa)

7.88

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029737)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0170101
rosa_multiflora	Rmu_co8181970.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	168
Acc36I	ACCTGC	1 cut(s)	168
AccII	CGCG	1 cut(s)	134
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	2 cut(s)	7, 20
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	106
AluBI	AGCT	1 cut(s)	117
AluI	AGCT	1 cut(s)	117
AlwI	GGATC	2 cut(s)	7, 20
AspLEI	GCGC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	192
BamHI	GGATCC	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	168
BlpI	GCTNAGC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	14
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
Bpu1102I	GCTNAGC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	38, 100
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
BseDI	CCNNGG	2 cut(s)	38, 100
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	2 cut(s)	132, 176
Bsh1236I	CGCG	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	12
Bsp1720I	GCTNAGC	1 cut(s)	118
BspACI	CCGC	1 cut(s)	122
BspCNI	CTCAG	2 cut(s)	131, 177
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	1 cut(s)	14
BspMI	ACCTGC	1 cut(s)	168
BspPI	GGATC	2 cut(s)	7, 20
BssECI	CCNNGG	2 cut(s)	38, 100
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	2 cut(s)	38, 100
BstDEI	CTNAG	3 cut(s)	8, 118, 185
BstENI	CCTNNNNNAGG	1 cut(s)	104
BstFNI	CGCG	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstUI	CGCG	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	12
BstXI	CCANNNNNNTGG	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	168
CfoI	GCGC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	189
CviJI	RGCY	4 cut(s)	43, 97, 117, 204
CviKI_1	RGCY	4 cut(s)	43, 97, 117, 204
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	3 cut(s)	8, 118, 185
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eco130I	CCWWGG	2 cut(s)	38, 100
EcoNI	CCTNNNNNAGG	1 cut(s)	104
EcoT14I	CCWWGG	2 cut(s)	38, 100
ErhI	CCWWGG	2 cut(s)	38, 100
FaiI	YATR	3 cut(s)	63, 172, 207
GlaI	GCGC	1 cut(s)	133
HhaI	GCGC	1 cut(s)	134
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HphI	GGTGA	1 cut(s)	192
Hpy166II	GTNNAC	2 cut(s)	28, 191
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	2 cut(s)	16, 154
Hpy8I	GTNNAC	2 cut(s)	28, 191
HpyF3I	CTNAG	3 cut(s)	8, 118, 185
HspAI	GCGC	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	5 cut(s)	29, 38, 96, 139, 163
MaeIII	GTNAC	1 cut(s)	180
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MflI	RGATCY	1 cut(s)	12
MluCI	AATT	1 cut(s)	125
MnlI	CCTC	3 cut(s)	100, 204, 233
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	134
NdeII	GATC	1 cut(s)	12
NlaIV	GGNNCC	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	180
PaqCI	CACCTGC	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	12
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	89
Sau3AI	GATC	1 cut(s)	12
SetI	ASST	4 cut(s)	25, 119, 182, 196
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	1 cut(s)	125
SsiI	CCGC	1 cut(s)	122
StyI	CCWWGG	2 cut(s)	38, 100
TasI	AATT	1 cut(s)	125
TatI	WGTACW	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	1 cut(s)	107
XagI	CCTNNNNNAGG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.