Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029804

Physical Location & Seq

Genomic Coordinates Reverse (-)

85792169 .. 85793719

Gene Structure 1551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53974

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTTAGTACTCGTGTTGCTGGAACAGCAGGTTATTTGGCACCTCAGTATACCATATGAGAGGGGTAAGCTGGTGGAGTTGGCCGATCCATCAACATTAAATGAAGGTTTGAATGTTGAGGAGGCTTGCATATTCATGAAGATTGGTCTTCTCTGCACCCAAGACAAGCCCAAGCTCCGACCATCCATGTCTACGGTTGTTAAGATGCTGACAGGTGAGACAGACGTGGATGACGAGAAGATAGACAAACCTGGAATGCTTTCTGAGTTCATGCATGGACCAGAGAGATTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

98

Amino Acids

11.09

Weight (kDa)

4.79

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029804)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0172461
rosa_samantha	Rh2AG634300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	39
AccI	GTMKAC	2 cut(s)	49, 191
AclWI	GGATC	1 cut(s)	80
AcoI	YGGCCR	1 cut(s)	81
AfaI	GTAC	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	112
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	2 cut(s)	70, 175
AluI	AGCT	2 cut(s)	70, 175
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	81
Asp700I	GAANNNNTTC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	39
BauI	CACGAG	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	140
BccI	CCATC	2 cut(s)	97, 190
BciT130I	CCWGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	19
BmcAI	AGTACT	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	278
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	252
BseGI	GGATG	2 cut(s)	182, 235
BseMII	CTCAG	2 cut(s)	58, 255
BseRI	GAGGAG	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	83
BshNI	GGYRCC	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	85
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	57, 256
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	41
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	39
BssMI	GATC	1 cut(s)	85
BssNAI	GTATAC	1 cut(s)	50
BssSI	CACGAG	1 cut(s)	11
Bst1107I	GTATAC	1 cut(s)	50
Bst2BI	CACGAG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	2 cut(s)	44, 264
BstF5I	GGATG	2 cut(s)	182, 235
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstV2I	GAAGAC	1 cut(s)	140
BstZ17I	GTATAC	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	83
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	2 cut(s)	182, 235
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	127
CciI	TCATGA	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	4 cut(s)	136, 187, 271, 275
CviJI	RGCY	5 cut(s)	70, 83, 125, 169, 175
CviKI_1	RGCY	5 cut(s)	70, 83, 125, 169, 175
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	2 cut(s)	44, 264
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	250
EcoT22I	ATGCAT	1 cut(s)	276
FaeI	CATG	4 cut(s)	139, 190, 274, 278
FaiI	YATR	8 cut(s)	50, 55, 57, 131, 137, 188, 272, 276
FatI	CATG	4 cut(s)	135, 186, 270, 274
FauNDI	CATATG	1 cut(s)	55
FblI	GTMKAC	2 cut(s)	49, 191
FokI	GGATG	2 cut(s)	169, 242
HaeIII	GGCC	1 cut(s)	83
Hin1II	CATG	4 cut(s)	139, 190, 274, 278
HinfI	GANTC	1 cut(s)	288
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	2 cut(s)	50, 192
Hpy188I	TCNGA	3 cut(s)	179, 265, 296
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	2 cut(s)	50, 192
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	129, 156, 274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	2 cut(s)	44, 264
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	4 cut(s)	139, 190, 274, 278
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	6 cut(s)	5, 14, 56, 198, 237, 264
LweI	GCATC	1 cut(s)	195
MaeII	ACGT	1 cut(s)	225
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	3 cut(s)	140, 151, 250
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	4 cut(s)	53, 54, 112, 115
Mph1103I	ATGCAT	1 cut(s)	276
MroXI	GAANNNNTTC	1 cut(s)	259
MseI	TTAA	2 cut(s)	98, 201
MslI	CAYNNNNRTG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	25
NdeI	CATATG	1 cut(s)	55
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	4 cut(s)	139, 190, 274, 278
NlaIV	GGNNCC	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	276
PagI	TCATGA	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	278
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	98, 201
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	278
ScaI	AGTACT	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	252
SetI	ASST	8 cut(s)	33, 45, 72, 109, 177, 217, 228, 253
SfaNI	GCATC	1 cut(s)	195
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	228
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	288
Tru1I	TTAA	2 cut(s)	98, 201
Tru9I	TTAA	2 cut(s)	98, 201
TspDTI	ATGAA	4 cut(s)	117, 124, 152, 259
VpaK11BI	GGWCC	1 cut(s)	278
XmiI	GTMKAC	2 cut(s)	49, 191
XmnI	GAANNNNTTC	1 cut(s)	259
ZrmI	AGTACT	1 cut(s)	9
Zsp2I	ATGCAT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.