Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0029804

Physical Location & Seq

Genomic Coordinates Reverse (-)

86022935 .. 86032018

Gene Structure 9084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG634300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCATCCATCGGGCGAAGGAAAAGTTCTTCTGCGCGCGTGATCCAGCAAGCAGCACTAGATTTAAGGGGTAAGCTGGTGGAGTTGGCCGATACATCAACATTAAATGAAGGTTTGAATGTTGAGGAGGCTTGCATATTCATGAAGATTGGTCTCCTTTGCACCCAAGACAAGCCCAAGCTCCGACCATCCATGTCTACGGTTGTTAAGATGCTGACAGGTGAGACAGACGTGGATGATGAGAAGATAGACAAACCTGGAATGCTTTCTGAGTTCATGGACCAGAGAGATTCGTCTGATGCTAAAAACACTCATCTTACTCACTATCACCTTATGGGAGGGTTCTCAATTCGTCATCTTCCTCCGAAAAAATCACCATGCTTCATTTGCTACCATGACCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

134

Amino Acids

14.95

Weight (kDa)

6.95

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029804)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0172461
rosa_samantha	Rh2AG634300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	197
AccII	CGCG	2 cut(s)	37, 39
AclWI	GGATC	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	118
AjiI	CACGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	2 cut(s)	76, 181
AluI	AGCT	2 cut(s)	76, 181
Alw26I	GTCTC	2 cut(s)	158, 218
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	265
AspLEI	GCGC	2 cut(s)	37, 39
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	3 cut(s)	233, 320, 366
AvaII	GGWCC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	2 cut(s)	17, 196
BciT130I	CCWGG	1 cut(s)	258
BcoDI	GTCTC	2 cut(s)	158, 218
BfaI	CTAG	1 cut(s)	59
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	1 cut(s)	280
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	3 cut(s)	14, 201, 289
BsaI	GGTCTC	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	258
BseGI	GGATG	3 cut(s)	5, 188, 241
BseMII	CTCAG	1 cut(s)	261
BsePI	GCGCGC	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	65
Bsh1236I	CGCG	2 cut(s)	37, 39
BshFI	GGCC	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	158, 218
BsmI	GAATGC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	262
BspFNI	CGCG	2 cut(s)	37, 39
BspHI	TCATGA	1 cut(s)	141
BspPI	GGATC	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	158
BssHII	GCGCGC	1 cut(s)	35
BssMI	GATC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	202
BstC8I	GCNNGC	3 cut(s)	37, 51, 133
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	3 cut(s)	5, 188, 241
BstFNI	CGCG	2 cut(s)	37, 39
BstHHI	GCGC	2 cut(s)	37, 39
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	2 cut(s)	158, 218
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstUI	CGCG	2 cut(s)	37, 39
BstV1I	GCAGC	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	89
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	3 cut(s)	5, 188, 241
Cac8I	GCNNGC	3 cut(s)	37, 51, 133
CciI	TCATGA	1 cut(s)	141
CfoI	GCGC	2 cut(s)	37, 39
Cfr13I	GGNCC	1 cut(s)	280
CviAII	CATG	5 cut(s)	142, 193, 277, 378, 395
CviJI	RGCY	5 cut(s)	76, 89, 131, 175, 181
CviKI_1	RGCY	5 cut(s)	76, 89, 131, 175, 181
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
EaeI	YGGCCR	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	256
FaeI	CATG	5 cut(s)	145, 196, 280, 381, 398
FaiI	YATR	7 cut(s)	137, 143, 194, 278, 335, 379, 396
FatI	CATG	5 cut(s)	141, 192, 276, 377, 394
FblI	GTMKAC	1 cut(s)	197
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	2 cut(s)	175, 248
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	2 cut(s)	36, 38
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	89
HhaI	GCGC	2 cut(s)	37, 39
Hin1II	CATG	5 cut(s)	145, 196, 280, 381, 398
Hin6I	GCGC	2 cut(s)	35, 37
HinP1I	GCGC	2 cut(s)	35, 37
HinfI	GANTC	1 cut(s)	290
HphI	GGTGA	3 cut(s)	233, 320, 366
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	4 cut(s)	185, 271, 298, 366
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	1 cut(s)	198
HpyAV	CCTTC	2 cut(s)	12, 104
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	135, 162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	5 cut(s)	145, 196, 280, 381, 398
HspAI	GCGC	2 cut(s)	35, 37
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	186
LpnPI	CCDG	6 cut(s)	59, 62, 204, 243, 270, 296
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	3 cut(s)	14, 201, 289
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	1 cut(s)	231
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	4 cut(s)	21, 157, 256, 350
MluCI	AATT	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	4 cut(s)	118, 121, 332, 372
MroXI	GAANNNNTTC	1 cut(s)	265
MseI	TTAA	4 cut(s)	65, 104, 207, 403
MslI	CAYNNNNRTG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	258
Mva1269I	GAATGC	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	258
MvnI	CGCG	2 cut(s)	37, 39
MwoI	GCNNNNNNNGC	1 cut(s)	387
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	5 cut(s)	145, 196, 280, 381, 398
PagI	TCATGA	1 cut(s)	141
PauI	GCGCGC	1 cut(s)	35
PctI	GAATGC	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	280
PteI	GCGCGC	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	4 cut(s)	65, 104, 207, 403
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	1 cut(s)	280
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	8 cut(s)	78, 115, 183, 223, 234, 259, 333, 402
SfaNI	GCATC	3 cut(s)	14, 201, 289
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	348
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	234
TasI	AATT	1 cut(s)	348
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	4 cut(s)	65, 104, 207, 403
Tru9I	TTAA	4 cut(s)	65, 104, 207, 403
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	5 cut(s)	123, 130, 158, 265, 373
VpaK11BI	GGWCC	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.