RchiOBHm_Chr2g0172471

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018572
Physical Location & Seq
Reverse (-)
85794998 .. 85796717
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53975

Sequence Viewer

Length: 438 bp
ATGGAGAAGGTACCTATTGTTGCTGTTAAGGCTAAGGCTAATCGGAAGGATGTCGAGGTTGAGGCCAAGAGTGAGACTGGTGAAGCCAATGGAAACAAGAGTGGTGATGCTGAGGTTGTGGCTGTCTCGGATGATTCTGGGAAGAAGCAAAGCCTTGCTGAGGATGTGAGAGTTTCCAAGATGGCTTCTGGGAAGATCAAACCTGATGAGTCTGCAAGGTGTGTGGAACAAGGTGTGGGAGAGTCCAAGACGGTCTCCGAAACTGAAAAGATGCTGGAGAGTATGAAGGAGCTCAACAAGAAGCTGATGGAGATGACGTACAAAGGAAAACTGACTTGTGAGTATGACAAGAAGGACATGAAGAGCAAGAATAAGAGTAATGATGATGATGATGATGATGAGGAGCCTGTCAAAGGATGCATGTCCTGGTTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.96

Weight (kDa)

5.04

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018572)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0172471
rosa_laevigata RLG00000022109
rosa_multiflora Rmu_sc0025807.1_g000001
rosa_roxburghii Rroxscaffold_2G00079830
rosa_rugosa Rorug02G0559100
rosa_samantha Rh2AG634600 Rh2BG648100 Rh2CG615000 Rh2DG663000
rosa_wichuraiana Rw2G052540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 10
AccB1I GGYRCC 1 cut(s) 10
AfaI GTAC 2 cut(s) 12, 320
AfiI CCNNNNNNNGG 2 cut(s) 160, 413
AjnI CCWGG 1 cut(s) 425
AluBI AGCT 2 cut(s) 292, 304
AluI AGCT 2 cut(s) 292, 304
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 3 cut(s) 68, 130, 259
AoxI GGCC 1 cut(s) 63
Asp718I GGTACC 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 92, 116
BanI GGYRCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 294
BbvCI CCTCAGC 2 cut(s) 111, 159
BccI CCATC 2 cut(s) 175, 301
BciT130I CCWGG 1 cut(s) 427
BcoDI GTCTC 3 cut(s) 68, 130, 259
Bme1390I CCNGG 1 cut(s) 427
BmiI GGNNCC 2 cut(s) 12, 405
BmrFI CCNGG 1 cut(s) 427
BmsI GCATC 3 cut(s) 97, 261, 407
BpmI CTGGAG 1 cut(s) 296
Bpu10I CCTNAGC 3 cut(s) 33, 111, 159
BsaI GGTCTC 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 413
Bse1I ACTGG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 427
BseGI GGATG 4 cut(s) 55, 136, 169, 422
BseLI CCNNNNNNNGG 2 cut(s) 160, 413
BseMII CTCAG 2 cut(s) 102, 150
BseNI ACTGG 1 cut(s) 82
BseRI GAGGAG 1 cut(s) 416
BshFI GGCC 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 294
BslI CCNNNNNNNGG 2 cut(s) 160, 413
BsmAI GTCTC 3 cut(s) 68, 130, 259
BsnI GGCC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 1 cut(s) 195
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 2 cut(s) 103, 151
BspLI GGNNCC 2 cut(s) 12, 405
BspQI GCTCTTC 1 cut(s) 356
BspT107I GGYRCC 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 259
BsrI ACTGG 1 cut(s) 82
BssMI GATC 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 427
Bst4CI ACNGT 2 cut(s) 253, 435
Bst6I CTCTTC 1 cut(s) 356
BstDEI CTNAG 3 cut(s) 33, 111, 159
BstENI CCTNNNNNAGG 2 cut(s) 158, 411
BstF5I GGATG 4 cut(s) 55, 136, 169, 422
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 3 cut(s) 68, 130, 259
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 427
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 1 cut(s) 425
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 4 cut(s) 55, 136, 169, 422
Csp6I GTAC 2 cut(s) 11, 319
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviAII CATG 2 cut(s) 358, 421
CviQI GTAC 2 cut(s) 11, 319
DdeI CTNAG 3 cut(s) 33, 111, 159
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Ecl136II GAGCTC 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 294
Eco31I GGTCTC 1 cut(s) 259
Eco53kI GAGCTC 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 292
EcoNI CCTNNNNNAGG 2 cut(s) 158, 411
EcoRII CCWGG 1 cut(s) 425
EcoT22I ATGCAT 1 cut(s) 422
EcoT38I GRGCYC 1 cut(s) 294
FaeI CATG 2 cut(s) 361, 424
FaiI YATR 4 cut(s) 284, 345, 359, 422
FatI CATG 2 cut(s) 357, 420
FokI GGATG 4 cut(s) 62, 143, 176, 429
FriOI GRGCYC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 296
HaeIII GGCC 1 cut(s) 65
Hin1II CATG 2 cut(s) 361, 424
HinfI GANTC 3 cut(s) 134, 209, 242
HphI GGTGA 2 cut(s) 92, 116
Hpy188I TCNGA 3 cut(s) 45, 130, 259
HpyAV CCTTC 3 cut(s) 40, 280, 346
HpyCH4III ACNGT 2 cut(s) 253, 435
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 2 cut(s) 215, 420
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 3 cut(s) 33, 111, 159
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 2 cut(s) 361, 424
KpnI GGTACC 1 cut(s) 14
Kzo9I GATC 1 cut(s) 195
LguI GCTCTTC 1 cut(s) 356
LmnI GCTCC 2 cut(s) 289, 403
LpnPI CCDG 7 cut(s) 63, 123, 174, 216, 260, 412, 420
LweI GCATC 3 cut(s) 97, 261, 407
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 1 cut(s) 429
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 3 cut(s) 154, 205, 373
MhlI GDGCHC 1 cut(s) 294
MlyI GAGTC 2 cut(s) 218, 251
MnlI CCTC 5 cut(s) 49, 55, 106, 154, 394
Mph1103I ATGCAT 1 cut(s) 422
MseI TTAA 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 427
MvaI CCWGG 1 cut(s) 427
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 1 cut(s) 195
NlaIII CATG 2 cut(s) 361, 424
NlaIV GGNNCC 2 cut(s) 12, 405
NsiI ATGCAT 1 cut(s) 422
NspI RCATGY 1 cut(s) 424
PciSI GCTCTTC 1 cut(s) 356
PfeI GAWTC 1 cut(s) 134
PleI GAGTC 2 cut(s) 217, 250
PpsI GAGTC 2 cut(s) 217, 250
Psp124BI GAGCTC 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 425
PspGI CCWGG 1 cut(s) 425
PspN4I GGNNCC 2 cut(s) 12, 405
RsaI GTAC 2 cut(s) 12, 320
RsaNI GTAC 2 cut(s) 11, 319
SacI GAGCTC 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 356
SaqAI TTAA 1 cut(s) 27
Sau3AI GATC 1 cut(s) 195
SchI GAGTC 2 cut(s) 218, 251
ScrFI CCNGG 1 cut(s) 427
SduI GDGCHC 1 cut(s) 294
SfaNI GCATC 3 cut(s) 97, 261, 407
SstI GAGCTC 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 425
TaaI ACNGT 2 cut(s) 253, 435
TaiI ACGT 1 cut(s) 320
TaqI TCGA 1 cut(s) 54
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TspDTI ATGAA 2 cut(s) 299, 374
XagI CCTNNNNNAGG 2 cut(s) 158, 411
XceI RCATGY 1 cut(s) 424
Zsp2I ATGCAT 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.