Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0018572

Physical Location & Seq

Genomic Coordinates Reverse (-)

86043093 .. 86046794

Gene Structure 3702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG634600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAGAAGGTACCTATTGTTGCTGTTAAGGCTAAGGCTAATCGGAAGGATGTCGAGGTTGAGGCCAAGAGTGAGACTGGTGAAGCCAATGGAAACAAGAGTGGTGATGCTGAGGTTGTGGGGGACTTGGATGATTCTGGGAAGAAGCAAAGCCTTGCTGAGGTTGTGGGTGTCTCGGATGATTCTGGGAAGAAGCAAAGCCTTGCTGAGGATGTGGGAGTTTCCAAGATGGCCTCTGGGAATAAGAGTGGTGATAATTCTGGGAAGATCAAACCTGATGAGTCTGCAAGTGTGGAACAAGGTGTGGGAGAGTCCAAGACGGCCTCCGAAACTGAAAAGATGCTGGAGAGTATGAAGGAGCTCAACAAGAAGCTGATGGAGATGACGTACAAAGGAAAACTGACTTGTGAGTATGACAAGAAGGACATGAAGAGCAAGAATAAGATTGATCGGGGAACACTTGAGAATGGCTCTGTGACAGCAGTAAAGAGGGGTAAGCTGGTGGAGTTGGCCGATACATCAACATTAAATGAAGGTTTGAATGTTGAGGAGGCTTGCATATTCATGAAGGTTGGTCTTCTCTGCACCCAAGACAAGCCCAAGCTCCGACCATCCATGTCTACGGTTGTTAAGATGCTGACAGGTGAGACAGACGTGGATGACGAGAAGATAGACAAACCTGGAATGCTTTCTGAGTTCATGCATGGACCAGAGAGATTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

241

Amino Acids

25.98

Weight (kDa)

5.2

Isoelectric Point (pI)

30.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018572)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0172471
rosa_laevigata	RLG00000022109
rosa_multiflora	Rmu_sc0025807.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079830
rosa_rugosa	Rorug02G0559100
rosa_samantha	Rh2AG634600 Rh2BG648100 Rh2CG615000 Rh2DG663000
rosa_wichuraiana	Rw2G052540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	10
AccB1I	GGYRCC	1 cut(s)	10
AccI	GTMKAC	1 cut(s)	620
AcoI	YGGCCR	1 cut(s)	510
AfaI	GTAC	2 cut(s)	12, 389
AfiI	CCNNNNNNNGG	2 cut(s)	160, 208
AgsI	TTSAA	1 cut(s)	541
AjiI	CACGTC	1 cut(s)	655
AjnI	CCWGG	1 cut(s)	679
AluBI	AGCT	4 cut(s)	361, 373, 499, 604
AluI	AGCT	4 cut(s)	361, 373, 499, 604
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	3 cut(s)	68, 178, 641
AoxI	GGCC	4 cut(s)	63, 231, 321, 510
Asp700I	GAANNNNTTC	1 cut(s)	688
Asp718I	GGTACC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	707
AsuHPI	GGTGA	4 cut(s)	92, 116, 263, 656
AvaII	GGWCC	1 cut(s)	707
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	363
BbvCI	CCTCAGC	3 cut(s)	111, 159, 207
BccI	CCATC	3 cut(s)	223, 370, 619
BceAI	ACGGC	1 cut(s)	336
BciT130I	CCWGG	1 cut(s)	681
BcoDI	GTCTC	3 cut(s)	68, 178, 641
Bme1390I	CCNGG	1 cut(s)	681
Bme18I	GGWCC	1 cut(s)	707
BmgBI	CACGTC	1 cut(s)	655
BmgT120I	GGNCC	1 cut(s)	707
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	681
BmsI	GCATC	3 cut(s)	97, 330, 624
BpiI	GAAGAC	1 cut(s)	569
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpmI	CTGGAG	1 cut(s)	365
Bpu10I	CCTNAGC	4 cut(s)	33, 111, 159, 207
BpuEI	CTTGAG	1 cut(s)	482
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 208
Bse1I	ACTGG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	681
BseGI	GGATG	6 cut(s)	55, 136, 184, 217, 611, 664
BseLI	CCNNNNNNNGG	2 cut(s)	160, 208
BseMII	CTCAG	4 cut(s)	102, 150, 198, 684
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	563
BsgI	GTGCAG	1 cut(s)	568
BshFI	GGCC	4 cut(s)	65, 233, 323, 512
BshNI	GGYRCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	2 cut(s)	160, 208
BsmAI	GTCTC	3 cut(s)	68, 178, 641
BsmFI	GGGAC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	690
BsnI	GGCC	4 cut(s)	65, 233, 323, 512
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	2 cut(s)	267, 448
BspANI	GGCC	4 cut(s)	65, 233, 323, 512
BspCNI	CTCAG	4 cut(s)	103, 151, 199, 685
BspHI	TCATGA	1 cut(s)	564
BspLI	GGNNCC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	425
BspT107I	GGYRCC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	82
BssMI	GATC	2 cut(s)	267, 448
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	5 cut(s)	33, 111, 159, 207, 693
BstENI	CCTNNNNNAGG	2 cut(s)	158, 206
BstF5I	GGATG	6 cut(s)	55, 136, 184, 217, 611, 664
BstKTI	GATC	2 cut(s)	270, 451
BstMAI	GTCTC	3 cut(s)	68, 178, 641
BstMBI	GATC	2 cut(s)	267, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	681
BstSCI	CCNGG	1 cut(s)	679
BstV2I	GAAGAC	1 cut(s)	569
BsuRI	GGCC	4 cut(s)	65, 233, 323, 512
BtrI	CACGTC	1 cut(s)	655
BtsCI	GGATG	6 cut(s)	55, 136, 184, 217, 611, 664
Cac8I	GCNNGC	1 cut(s)	556
CciI	TCATGA	1 cut(s)	564
Cfr13I	GGNCC	1 cut(s)	707
Csp6I	GTAC	2 cut(s)	11, 388
CviAII	CATG	5 cut(s)	427, 565, 616, 700, 704
CviQI	GTAC	2 cut(s)	11, 388
DdeI	CTNAG	5 cut(s)	33, 111, 159, 207, 693
DpnI	GATC	2 cut(s)	269, 450
DpnII	GATC	2 cut(s)	267, 448
EaeI	YGGCCR	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	707
Eco53kI	GAGCTC	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	361
EcoNI	CCTNNNNNAGG	2 cut(s)	158, 206
EcoRII	CCWGG	1 cut(s)	679
EcoT22I	ATGCAT	1 cut(s)	705
EcoT38I	GRGCYC	1 cut(s)	363
FaeI	CATG	5 cut(s)	430, 568, 619, 703, 707
FaiI	YATR	8 cut(s)	353, 414, 428, 560, 566, 617, 701, 705
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	5 cut(s)	426, 564, 615, 699, 703
FblI	GTMKAC	1 cut(s)	620
FokI	GGATG	6 cut(s)	62, 143, 191, 224, 598, 671
FriOI	GRGCYC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	365
HaeIII	GGCC	4 cut(s)	65, 233, 323, 512
Hin1II	CATG	5 cut(s)	430, 568, 619, 703, 707
HinfI	GANTC	5 cut(s)	134, 182, 281, 311, 717
HphI	GGTGA	4 cut(s)	92, 116, 263, 656
Hpy166II	GTNNAC	1 cut(s)	621
Hpy188I	TCNGA	6 cut(s)	45, 178, 328, 608, 694, 725
Hpy188III	TCNNGA	1 cut(s)	565
Hpy8I	GTNNAC	1 cut(s)	621
HpyAV	CCTTC	5 cut(s)	40, 349, 415, 527, 562
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	2 cut(s)	386, 654
HpyCH4V	TGCA	4 cut(s)	287, 558, 585, 703
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	5 cut(s)	33, 111, 159, 207, 693
HpySE526I	ACGT	2 cut(s)	386, 654
Hsp92II	CATG	5 cut(s)	430, 568, 619, 703, 707
KpnI	GGTACC	1 cut(s)	14
Kzo9I	GATC	2 cut(s)	267, 448
LguI	GCTCTTC	1 cut(s)	425
LmnI	GCTCC	2 cut(s)	358, 609
LweI	GCATC	3 cut(s)	97, 330, 624
MaeII	ACGT	2 cut(s)	386, 654
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	2 cut(s)	269, 450
MboI	GATC	2 cut(s)	267, 448
MboII	GAAGA	6 cut(s)	154, 202, 277, 442, 569, 679
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	1 cut(s)	256
MlyI	GAGTC	2 cut(s)	290, 320
MmeI	TCCRAC	1 cut(s)	631
Mph1103I	ATGCAT	1 cut(s)	705
MroXI	GAANNNNTTC	1 cut(s)	688
MseI	TTAA	3 cut(s)	27, 527, 630
MslI	CAYNNNNRTG	1 cut(s)	563
MspR9I	CCNGG	1 cut(s)	681
Mva1269I	GAATGC	1 cut(s)	690
MvaI	CCWGG	1 cut(s)	681
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	2 cut(s)	267, 448
NlaIII	CATG	5 cut(s)	430, 568, 619, 703, 707
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	475
NsiI	ATGCAT	1 cut(s)	705
PagI	TCATGA	1 cut(s)	564
PciSI	GCTCTTC	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	1 cut(s)	660
PctI	GAATGC	1 cut(s)	690
PdmI	GAANNNNTTC	1 cut(s)	688
PfeI	GAWTC	3 cut(s)	134, 182, 717
PleI	GAGTC	2 cut(s)	289, 319
PpsI	GAGTC	2 cut(s)	289, 319
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	679
PspGI	CCWGG	1 cut(s)	679
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	707
RsaI	GTAC	2 cut(s)	12, 389
RsaNI	GTAC	2 cut(s)	11, 388
RseI	CAYNNNNRTG	1 cut(s)	563
SacI	GAGCTC	1 cut(s)	363
SapI	GCTCTTC	1 cut(s)	425
SaqAI	TTAA	3 cut(s)	27, 527, 630
Sau3AI	GATC	2 cut(s)	267, 448
Sau96I	GGNCC	1 cut(s)	707
SchI	GAGTC	2 cut(s)	290, 320
ScrFI	CCNGG	1 cut(s)	681
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	3 cut(s)	97, 330, 624
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	1 cut(s)	256
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	679
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	2 cut(s)	389, 657
TaqI	TCGA	1 cut(s)	54
TasI	AATT	1 cut(s)	256
TfiI	GAWTC	3 cut(s)	134, 182, 717
Tru1I	TTAA	3 cut(s)	27, 527, 630
Tru9I	TTAA	3 cut(s)	27, 527, 630
TseFI	GTSAC	1 cut(s)	475
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	6 cut(s)	368, 443, 546, 553, 581, 688
VpaK11BI	GGWCC	1 cut(s)	707
XagI	CCTNNNNNAGG	2 cut(s)	158, 206
XmiI	GTMKAC	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	688
Zsp2I	ATGCAT	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.