Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021191

Physical Location & Seq

Genomic Coordinates Reverse (-)

934777 .. 937981

Gene Structure 3205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41633

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCTGTTCCGGTTGAAGAAGCCATTGCTGCGCTATCTACATTCTCACTGGAGGATGAGCAAGCAGAGGTTCAAGGACCAGGAGTTTGGGTTTCGACTGACACCGGAGCAACTGACAGTCCAATTGAGTATAGCGATGTTTCTGCATATCGCTTGTCTTTATCTGAAGACACAAAAGCTCTCAATCAACTGAATGCTCTTATACTCGAGGGAAAGGAGATGGGATCTGTGCTGTATACATATCGTAGTTGTGTCAAGGCACTTCCTCAGCTTCCCGATTCTATGAAACAAAATCAAGCTGACTTGTACCTTGAAACTTATCAAGTTCTGGACTTGGAAATGAGTCGCTTACGTGAAATACAGCGCTGGCAAGCTTCGGCTGCATCAAAGCTAGCTGCAGATATGCAACGCTTCTCAAGGCCCGAGAGACGCATTAATGGGCCTACAGTAACTCATCTCTGGTCCATGTTGAAGTTACTTGACACTTTGGTGCAACTTGATCATCTTAAAAATGCAAAGGCAAGCATACCAAATGATTTCTCTTGGTATAAAAGGACATTCACACAAGTAAGTGTACAGTGGCATGATACTGATTCAATGAGAGAGGAGTTGGATGACTTACAGATTTTCCTTAGCACAAGGTGGGCCATCTTGTTGAATTTGCATGCTGAGATGTTCCGTGTGAACAACGTAGAAGATATTCTTCAAGTACTCATAGTTTTTGCTGTCGAGTCACTAGAGCTGGATTTTGCACTTCTGTTCCCAGAGCGGCACATTCTTCTTCGTGTTCTGCCGATTCTAGTTGTCTTAGCTACATCGTCAGAAAAAGATAGCGAGTCTTTGTACAAGAGAGTGAAAATCAACAGACTTATTAACATATTCAAGAATGATCCAGTAATTCCTGCATTTCCAGATCTCCATCTTTCTCCTGCTGCAATCATGAAAGAATTGTCAATGTACTTCCAAAAGTTTTCTGCCCAAACTCGTCTTCTCAGCCTTCCATCACCTCATGAGCTTCCAGCCCGTGAGGCACAAGAATATCCTTTGTTTATCTTTTTTGTCAGTTTGTTAACTGAATTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0016043 GO:0030029 GO:0030036 GO:0030154 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko03013 ko04810 map03013 map04810

Pfam Domains

Protein Families

DUF1394 FragX_IP

Protein Analysis

361

Amino Acids

41.25

Weight (kDa)

5.03

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021191)

Species	Orthologous Gene IDs
malus_domestica	MD12G1252700.v1.1
rosa_chinensis	RchiOBHm_Chr3g0448911
rosa_samantha	Rh3BG015300 Rh3CG014200 Rh3DG015800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	769
AccI	GTMKAC	1 cut(s)	236
AciI	CCGC	1 cut(s)	769
AclWI	GGATC	2 cut(s)	232, 884
AcsI	RAATTY	1 cut(s)	658
AcuI	CTGAAG	1 cut(s)	186
AdeI	CACNNNGTG	1 cut(s)	642
AfaI	GTAC	5 cut(s)	308, 576, 711, 845, 959
AfeI	AGCGCT	1 cut(s)	365
AgsI	TTSAA	8 cut(s)	17, 74, 314, 472, 597, 658, 707, 883
AjnI	CCWGG	1 cut(s)	79
AjuI	GAANNNNNNNTTGG	2 cut(s)	972, 1004
AleI	CACNNNNGTG	1 cut(s)	488
AluBI	AGCT	9 cut(s)	179, 271, 299, 374, 391, 395, 742, 812, 1015
AluI	AGCT	9 cut(s)	179, 271, 299, 374, 391, 395, 742, 812, 1015
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	2 cut(s)	232, 884
Ama87I	CYCGRG	2 cut(s)	206, 422
Aor51HI	AGCGCT	1 cut(s)	365
AoxI	GGCC	3 cut(s)	419, 440, 645
ApeKI	GCWGC	4 cut(s)	29, 380, 395, 932
ApoI	RAATTY	1 cut(s)	658
ArsI	GACNNNNNNTTYG	2 cut(s)	69, 101
AseI	ATTAAT	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	699
AspLEI	GCGC	2 cut(s)	34, 366
AspS9I	GGNCC	5 cut(s)	77, 420, 440, 462, 645
AsuHPI	GGTGA	1 cut(s)	996
AsuNHI	GCTAGC	1 cut(s)	391
AvaI	CYCGRG	2 cut(s)	206, 422
AvaII	GGWCC	2 cut(s)	77, 462
BbsI	GAAGAC	2 cut(s)	174, 980
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	4 cut(s)	16, 367, 382, 919
BccI	CCATC	4 cut(s)	214, 656, 927, 1009
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	1 cut(s)	81
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	3 cut(s)	392, 737, 800
BfmI	CTRYAG	2 cut(s)	396, 444
BfoI	RGCGCY	1 cut(s)	367
BglI	GCCNNNNNGGC	1 cut(s)	1028
BglII	AGATCT	1 cut(s)	913
BisI	GCNGC	5 cut(s)	30, 381, 396, 770, 933
BlsI	GCNGC	5 cut(s)	31, 382, 397, 771, 934
BmcAI	AGTACT	1 cut(s)	711
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	2 cut(s)	77, 462
BmeT110I	CYCGRG	2 cut(s)	206, 422
BmgT120I	GGNCC	5 cut(s)	77, 420, 440, 462, 645
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	392
BmtI	GCTAGC	1 cut(s)	395
BpiI	GAAGAC	2 cut(s)	174, 980
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	2 cut(s)	267, 632
BpuEI	CTTGAG	1 cut(s)	400
BsaAI	YACGTR	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	918
BsaWI	WCCGGW	2 cut(s)	10, 104
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bse1I	ACTGG	2 cut(s)	54, 893
Bse3DI	GCAATG	1 cut(s)	24
Bse8I	GATNNNNATC	1 cut(s)	918
BseBI	CCWGG	1 cut(s)	81
BseGI	GGATG	2 cut(s)	61, 619
BseJI	GATNNNNATC	1 cut(s)	918
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	3 cut(s)	281, 660, 1006
BseNI	ACTGG	2 cut(s)	54, 893
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	4 cut(s)	16, 367, 382, 919
BshFI	GGCC	3 cut(s)	421, 442, 647
BsiHKCI	CYCGRG	2 cut(s)	206, 422
BsiSI	CCGG	2 cut(s)	11, 105
BsmAI	GTCTC	1 cut(s)	421
BsmBI	CGTCTC	1 cut(s)	421
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	3 cut(s)	421, 442, 647
BsoBI	CYCGRG	2 cut(s)	206, 422
Bsp1407I	TGTACA	2 cut(s)	574, 843
Bsp143I	GATC	4 cut(s)	224, 499, 889, 913
BspACI	CCGC	1 cut(s)	769
BspANI	GGCC	3 cut(s)	421, 442, 647
BspCNI	CTCAG	3 cut(s)	280, 661, 1005
BspHI	TCATGA	2 cut(s)	939, 1009
BspMAI	CTGCAG	1 cut(s)	400
BspOI	GCTAGC	1 cut(s)	395
BspPI	GGATC	2 cut(s)	232, 884
BsrBI	CCGCTC	1 cut(s)	769
BsrDI	GCAATG	1 cut(s)	24
BsrGI	TGTACA	2 cut(s)	574, 843
BsrI	ACTGG	2 cut(s)	54, 893
BssMI	GATC	4 cut(s)	224, 499, 889, 913
BssNAI	GTATAC	1 cut(s)	237
Bst1107I	GTATAC	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	3 cut(s)	119, 448, 579
BstAUI	TGTACA	2 cut(s)	574, 843
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	6 cut(s)	63, 368, 372, 393, 523, 666
BstDEI	CTNAG	5 cut(s)	267, 632, 669, 808, 992
BstF5I	GGATG	2 cut(s)	61, 619
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	2 cut(s)	34, 366
BstKTI	GATC	4 cut(s)	227, 502, 892, 916
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	4 cut(s)	224, 499, 889, 913
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 380, 1028
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	1 cut(s)	668
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	2 cut(s)	396, 444
BstV1I	GCAGC	4 cut(s)	16, 367, 382, 919
BstV2I	GAAGAC	2 cut(s)	174, 980
BstX2I	RGATCY	2 cut(s)	224, 913
BstXI	CCANNNNNNTGG	1 cut(s)	87
BstYI	RGATCY	2 cut(s)	224, 913
BstZ17I	GTATAC	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	421, 442, 647
BtgZI	GCGATG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	61, 619
BtsIMutI	CAGTG	2 cut(s)	47, 584
Cac8I	GCNNGC	6 cut(s)	63, 368, 372, 393, 523, 666
CciI	TCATGA	2 cut(s)	939, 1009
CfoI	GCGC	2 cut(s)	34, 366
Cfr13I	GGNCC	5 cut(s)	77, 420, 440, 462, 645
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	5 cut(s)	307, 575, 710, 844, 958
CviAII	CATG	6 cut(s)	466, 584, 665, 940, 1010, 1083
CviQI	GTAC	5 cut(s)	307, 575, 710, 844, 958
DdeI	CTNAG	5 cut(s)	267, 632, 669, 808, 992
DpnI	GATC	4 cut(s)	226, 501, 891, 915
DpnII	GATC	4 cut(s)	224, 499, 889, 913
DraIII	CACNNNGTG	1 cut(s)	642
Eco47I	GGWCC	2 cut(s)	77, 462
Eco47III	AGCGCT	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	186
Eco88I	CYCGRG	2 cut(s)	206, 422
EcoRII	CCWGG	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	421
FaeI	CATG	6 cut(s)	469, 587, 668, 943, 1013, 1086
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FatI	CATG	6 cut(s)	465, 583, 664, 939, 1009, 1082
FbaI	TGATCA	1 cut(s)	499
FblI	GTMKAC	1 cut(s)	236
Fnu4HI	GCNGC	5 cut(s)	30, 381, 396, 770, 933
FokI	GGATG	2 cut(s)	68, 626
Fsp4HI	GCNGC	5 cut(s)	30, 381, 396, 770, 933
FspBI	CTAG	3 cut(s)	392, 737, 800
GlaI	GCGC	2 cut(s)	33, 365
GluI	GCNGC	5 cut(s)	30, 381, 396, 770, 933
GsuI	CTGGAG	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	3 cut(s)	421, 442, 647
HapII	CCGG	2 cut(s)	11, 105
HgaI	GACGC	1 cut(s)	438
HhaI	GCGC	2 cut(s)	34, 366
Hin1II	CATG	6 cut(s)	469, 587, 668, 943, 1013, 1086
Hin6I	GCGC	2 cut(s)	32, 364
HinP1I	GCGC	2 cut(s)	32, 364
HincII	GTYRAC	1 cut(s)	1071
HindII	GTYRAC	1 cut(s)	1071
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	6 cut(s)	278, 343, 593, 731, 796, 836
HpaI	GTTAAC	1 cut(s)	1071
HpaII	CCGG	2 cut(s)	11, 105
HphI	GGTGA	1 cut(s)	996
Hpy166II	GTNNAC	4 cut(s)	237, 575, 685, 1071
Hpy188I	TCNGA	2 cut(s)	166, 823
Hpy188III	TCNNGA	6 cut(s)	275, 329, 883, 911, 940, 1010
Hpy8I	GTNNAC	4 cut(s)	237, 575, 685, 1071
HpyAV	CCTTC	1 cut(s)	1007
HpyCH4III	ACNGT	3 cut(s)	119, 448, 579
HpyCH4IV	ACGT	2 cut(s)	352, 690
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 380, 1028
HpyF3I	CTNAG	5 cut(s)	267, 632, 669, 808, 992
HpySE526I	ACGT	2 cut(s)	352, 690
Hsp92II	CATG	6 cut(s)	469, 587, 668, 943, 1013, 1086
HspAI	GCGC	2 cut(s)	32, 364
Ksp22I	TGATCA	1 cut(s)	499
KspAI	GTTAAC	1 cut(s)	1071
Kzo9I	GATC	4 cut(s)	224, 499, 889, 913
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	4 cut(s)	16, 367, 382, 919
LweI	GCATC	1 cut(s)	392
MaeI	CTAG	3 cut(s)	392, 737, 800
MaeII	ACGT	2 cut(s)	352, 690
MaeIII	GTNAC	3 cut(s)	448, 474, 732
MalI	GATC	4 cut(s)	226, 501, 891, 915
MbiI	CCGCTC	1 cut(s)	769
MboI	GATC	4 cut(s)	224, 499, 889, 913
MboII	GAAGA	7 cut(s)	29, 179, 695, 707, 770, 773, 980
MfeI	CAATTG	1 cut(s)	123
MflI	RGATCY	2 cut(s)	224, 913
MluCI	AATT	5 cut(s)	123, 658, 897, 947, 1076
MlyI	GAGTC	3 cut(s)	352, 740, 845
MmeI	TCCRAC	1 cut(s)	591
MnlI	CCTC	7 cut(s)	46, 61, 202, 276, 598, 1017, 1021
MroXI	GAANNNNTTC	1 cut(s)	699
MseI	TTAA	4 cut(s)	435, 507, 873, 1070
MslI	CAYNNNNRTG	1 cut(s)	488
MspI	CCGG	2 cut(s)	11, 105
MspR9I	CCNGG	1 cut(s)	81
MunI	CAATTG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	3 cut(s)	29, 380, 1028
NdeII	GATC	4 cut(s)	224, 499, 889, 913
NheI	GCTAGC	1 cut(s)	391
NlaIII	CATG	6 cut(s)	469, 587, 668, 943, 1013, 1086
NmuCI	GTSAC	1 cut(s)	732
NspI	RCATGY	1 cut(s)	668
OliI	CACNNNNGTG	1 cut(s)	488
PaeI	GCATGC	1 cut(s)	668
PaeR7I	CTCGAG	1 cut(s)	206
PagI	TCATGA	2 cut(s)	939, 1009
PctI	GAATGC	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	3 cut(s)	278, 593, 796
PkrI	GCNGC	5 cut(s)	31, 382, 397, 771, 934
PleI	GAGTC	3 cut(s)	351, 739, 844
PpsI	GAGTC	3 cut(s)	351, 739, 844
Ppu21I	YACGTR	1 cut(s)	353
PshBI	ATTAAT	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspPI	GGNCC	5 cut(s)	77, 420, 440, 462, 645
PspXI	VCTCGAGB	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	2 cut(s)	224, 913
RsaI	GTAC	5 cut(s)	308, 576, 711, 845, 959
RsaNI	GTAC	5 cut(s)	307, 575, 710, 844, 958
RseI	CAYNNNNRTG	1 cut(s)	488
SaqAI	TTAA	4 cut(s)	435, 507, 873, 1070
SatI	GCNGC	5 cut(s)	30, 381, 396, 770, 933
Sau3AI	GATC	4 cut(s)	224, 499, 889, 913
Sau96I	GGNCC	5 cut(s)	77, 420, 440, 462, 645
ScaI	AGTACT	1 cut(s)	711
SchI	GAGTC	3 cut(s)	352, 740, 845
ScrFI	CCNGG	1 cut(s)	81
SfaNI	GCATC	1 cut(s)	392
SfcI	CTRYAG	2 cut(s)	396, 444
Sfr274I	CTCGAG	1 cut(s)	206
SinI	GGWCC	2 cut(s)	77, 462
SlaI	CTCGAG	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	488
SmlI	CTYRAG	2 cut(s)	206, 415
SmoI	CTYRAG	2 cut(s)	206, 415
SphI	GCATGC	1 cut(s)	668
Sse9I	AATT	5 cut(s)	123, 658, 897, 947, 1076
SsiI	CCGC	1 cut(s)	769
SspMI	CTAG	3 cut(s)	392, 737, 800
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	3 cut(s)	119, 448, 579
TaiI	ACGT	2 cut(s)	355, 693
TaqI	TCGA	3 cut(s)	95, 207, 729
TasI	AATT	5 cut(s)	123, 658, 897, 947, 1076
TatI	WGTACW	4 cut(s)	574, 709, 843, 957
TauI	GCSGC	1 cut(s)	772
TfiI	GAWTC	3 cut(s)	278, 593, 796
Tru1I	TTAA	4 cut(s)	435, 507, 873, 1070
Tru9I	TTAA	4 cut(s)	435, 507, 873, 1070
TscAI	CASTG	2 cut(s)	54, 584
TseFI	GTSAC	1 cut(s)	732
TseI	GCWGC	4 cut(s)	29, 380, 395, 932
Tsp45I	GTSAC	1 cut(s)	732
TspDTI	ATGAA	2 cut(s)	299, 956
TspGWI	ACGGA	1 cut(s)	668
TspRI	CASTG	2 cut(s)	54, 584
VpaK11BI	GGWCC	2 cut(s)	77, 462
VspI	ATTAAT	1 cut(s)	435
XapI	RAATTY	1 cut(s)	658
XceI	RCATGY	1 cut(s)	668
XhoI	CTCGAG	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	3 cut(s)	392, 737, 800
ZrmI	AGTACT	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.