Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030002

Physical Location & Seq

Genomic Coordinates Reverse (-)

4779056 .. 4781940

Gene Structure 2885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42185

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCATACTGCAGTCTGAACTATTGTATAACAGAAATGGTACCATGTTTTTCCTTCATTTTTCTTGTTCTACCATCTAAGTCTGCATTTCCTTGTGAGGATTCCAGTGATTGCAAAACTTTGCTCAAATTCAAGGAGGAGCTGACAAGTGATCCCGAAGGTCATCTTCAAACTTGGAACGAAGCCAATCCCTTCTGCAACTGGACTGGAATTACATGCCACCAACGTCTCCAAAACCGGGTTATAGGCCTTGAACTGATAGATATGGGCTTGCAAGGAAGGATATCACCATTCATATCCAACCTCTCTCTTCTTACCAACCTGTCTTTACAGAGCAATGGGTTCTATGGACAAATTCCATCTTCCTTGGGATTACTTAAAGAGTTGGCATTTCTGAATGTAAGCTCAAACAAGCTTGAAGGTAGCATTCCAGGTTCATTACATGGTTGCCAGAGCTTGAAAGTCATAGACTTGAATGACAACAATCTATCTGGTGTTCTCCCTAAAGAACTCGGCTGGATGAAGAATCTAACATACTTGGCTCTCTCCTTAAACAATCTCAGTGGACTGCTTCCAGCCTCACTTTCAAACTTGAAGGAATTGACAAAACTACAACTGGCCGTCAACTATTTTACTGGAAAGATCCCACCAGAGCTTGGAGCATTAAGAAAGCTAGAAATTTTGCATCTCCATACAAACTATCTCGAAGGCTCAATACCTGCAGTAATTGGTAACTGCACTGCTTTACGCGAAATCTCGCTGCTTGAGAATATGTTAAATGGAGAAATCCCTTCAGATATGTTTTCTAAACTCAAGAATATGCAGAAAATGTACATGTCAAACAACAAGCTTTCTGGGAGAATTCCAGTGACCCTCACCAATCTTTCACAGCTGATACTGTTTGATGTTAGTTTGAATAATTTAGAGGGAGAAGTTCCTGCAGGATTGGGCAAGCTAGAGAACCTTGAGAATTTCTACTTACATACCAACAACTTGGGTCATTGGGTGGCGGCTCTGGTAATTCTTCTCTCAGTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009960 GO:0010154 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

346

Amino Acids

38.19

Weight (kDa)

5.83

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	35 - 73	1.7e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	146 - 256	3.3e-10	Leucine-rich repeat region
LRR_8	PF13855	152 - 209	8.6e-07	Leucine rich repeat
LRR_8	PF13855	223 - 284	1.4e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030002)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0454861
rosa_laevigata	RLG00000025407

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	727
Acc65I	GGTACC	1 cut(s)	40
AccB1I	GGYRCC	1 cut(s)	40
AccB7I	CCANNNNNTGG	1 cut(s)	656
AccII	CGCG	1 cut(s)	750
AciI	CCGC	1 cut(s)	1010
AclWI	GGATC	2 cut(s)	146, 637
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	5 cut(s)	128, 354, 678, 861, 970
AcuI	CTGAAG	1 cut(s)	777
AfaI	GTAC	2 cut(s)	42, 833
AfiI	CCNNNNNNNGG	2 cut(s)	238, 656
AflIII	ACRYGT	1 cut(s)	834
AgsI	TTSAA	9 cut(s)	133, 170, 254, 419, 460, 475, 588, 595, 916
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	9 cut(s)	142, 405, 415, 456, 655, 673, 850, 892, 955
AluI	AGCT	9 cut(s)	142, 405, 415, 456, 655, 673, 850, 892, 955
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	2 cut(s)	146, 637
AoxI	GGCC	2 cut(s)	247, 618
ApeKI	GCWGC	1 cut(s)	760
ApoI	RAATTY	5 cut(s)	128, 354, 678, 861, 970
Asp718I	GGTACC	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	279, 868
BanI	GGYRCC	1 cut(s)	40
BarI	GAAGNNNNNNTAC	2 cut(s)	699, 731
BbvI	GCAGC	1 cut(s)	747
BccI	CCATC	2 cut(s)	82, 367
BceAI	ACGGC	1 cut(s)	605
BciT130I	CCWGG	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	2 cut(s)	674, 956
BfmI	CTRYAG	3 cut(s)	10, 720, 939
BfuAI	ACCTGC	1 cut(s)	727
BisI	GCNGC	2 cut(s)	761, 1011
BlsI	GCNGC	2 cut(s)	762, 1012
Bme1390I	CCNGG	2 cut(s)	239, 432
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	2 cut(s)	239, 432
BmsI	GCATC	1 cut(s)	694
BpuEI	CTTGAG	3 cut(s)	785, 797, 986
BpuMI	CCSGG	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 656
Bse1I	ACTGG	6 cut(s)	105, 206, 211, 621, 640, 866
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	238, 656
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	574
BseNI	ACTGG	6 cut(s)	105, 206, 211, 621, 640, 866
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	747
BsgI	GTGCAG	1 cut(s)	721
Bsh1236I	CGCG	1 cut(s)	750
BshFI	GGCC	2 cut(s)	249, 620
BshNI	GGYRCC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	238, 656
BsmAI	GTCTC	1 cut(s)	233
BsmBI	CGTCTC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	426
BsnI	GGCC	2 cut(s)	249, 620
Bsp1407I	TGTACA	1 cut(s)	831
Bsp143I	GATC	2 cut(s)	151, 642
BspACI	CCGC	1 cut(s)	1010
BspANI	GGCC	2 cut(s)	249, 620
BspCNI	CTCAG	1 cut(s)	573
BspFNI	CGCG	1 cut(s)	750
BspLI	GGNNCC	1 cut(s)	42
BspMAI	CTGCAG	3 cut(s)	14, 724, 943
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	2 cut(s)	146, 637
BspT107I	GGYRCC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	343
BsrGI	TGTACA	1 cut(s)	831
BsrI	ACTGG	6 cut(s)	105, 206, 211, 621, 640, 866
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	151, 642
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	900
Bst6I	CTCTTC	1 cut(s)	315
BstAUI	TGTACA	1 cut(s)	831
BstC8I	GCNNGC	2 cut(s)	272, 953
BstDEI	CTNAG	3 cut(s)	78, 560, 1030
BstF5I	GGATG	1 cut(s)	525
BstFNI	CGCG	1 cut(s)	750
BstKTI	GATC	2 cut(s)	154, 645
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	2 cut(s)	151, 642
BstNI	CCWGG	1 cut(s)	432
BstNSI	RCATGY	2 cut(s)	219, 838
BstSCI	CCNGG	2 cut(s)	237, 430
BstSFI	CTRYAG	3 cut(s)	10, 720, 939
BstUI	CGCG	1 cut(s)	750
BstV1I	GCAGC	1 cut(s)	747
BstX2I	RGATCY	1 cut(s)	642
BstXI	CCANNNNNNTGG	1 cut(s)	994
BstYI	RGATCY	1 cut(s)	642
BsuRI	GGCC	2 cut(s)	249, 620
BtsCI	GGATG	1 cut(s)	525
BtsI	GCAGTG	1 cut(s)	738
BtsIMutI	CAGTG	4 cut(s)	112, 568, 738, 873
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	2 cut(s)	272, 953
Csp6I	GTAC	2 cut(s)	41, 832
CspCI	CAANNNNNGTGG	2 cut(s)	544, 579
CviAII	CATG	4 cut(s)	45, 216, 443, 835
CviQI	GTAC	2 cut(s)	41, 832
DdeI	CTNAG	3 cut(s)	78, 560, 1030
DpnI	GATC	2 cut(s)	153, 644
DpnII	GATC	2 cut(s)	151, 642
EaeI	YGGCCR	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	249
Eco32I	GATATC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	777
EcoRI	GAATTC	1 cut(s)	861
EcoRII	CCWGG	1 cut(s)	430
EcoRV	GATATC	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	4 cut(s)	48, 219, 446, 838
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FatI	CATG	4 cut(s)	44, 215, 442, 834
Fnu4HI	GCNGC	2 cut(s)	761, 1011
FokI	GGATG	1 cut(s)	532
Fsp4HI	GCNGC	2 cut(s)	761, 1011
FspBI	CTAG	2 cut(s)	674, 956
GluI	GCNGC	2 cut(s)	761, 1011
HaeIII	GGCC	2 cut(s)	249, 620
HapII	CCGG	1 cut(s)	238
Hin1II	CATG	4 cut(s)	48, 219, 446, 838
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HindIII	AAGCTT	2 cut(s)	413, 848
HinfI	GANTC	2 cut(s)	101, 526
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	2 cut(s)	279, 868
Hpy166II	GTNNAC	2 cut(s)	566, 625
Hpy188I	TCNGA	3 cut(s)	18, 396, 796
Hpy188III	TCNNGA	4 cut(s)	155, 704, 814, 1038
Hpy8I	GTNNAC	2 cut(s)	566, 625
HpyAV	CCTTC	8 cut(s)	64, 152, 202, 273, 413, 589, 701, 801
HpyCH4III	ACNGT	1 cut(s)	900
HpyCH4IV	ACGT	1 cut(s)	226
HpyF3I	CTNAG	3 cut(s)	78, 560, 1030
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	4 cut(s)	48, 219, 446, 838
KpnI	GGTACC	1 cut(s)	44
Kzo9I	GATC	2 cut(s)	151, 642
LmnI	GCTCC	2 cut(s)	139, 659
Lsp1109I	GCAGC	1 cut(s)	747
LweI	GCATC	1 cut(s)	694
MaeI	CTAG	2 cut(s)	674, 956
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	2 cut(s)	731, 868
MalI	GATC	2 cut(s)	153, 644
MboI	GATC	2 cut(s)	151, 642
MboII	GAAGA	5 cut(s)	158, 302, 354, 535, 1016
MflI	RGATCY	1 cut(s)	642
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	6 cut(s)	91, 130, 314, 589, 884, 919
MseI	TTAA	4 cut(s)	378, 551, 665, 776
MspA1I	CMGCKG	1 cut(s)	892
MspI	CCGG	1 cut(s)	238
MspR9I	CCNGG	2 cut(s)	239, 432
Mva1269I	GAATGC	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	750
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	2 cut(s)	151, 642
NlaIII	CATG	4 cut(s)	48, 219, 446, 838
NlaIV	GGNNCC	1 cut(s)	42
NmeAIII	GCCGAG	1 cut(s)	492
NmuCI	GTSAC	1 cut(s)	868
NspI	RCATGY	2 cut(s)	219, 838
PceI	AGGCCT	1 cut(s)	249
PciI	ACATGT	1 cut(s)	834
PctI	GAATGC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	101, 526
PflMI	CCANNNNNTGG	1 cut(s)	656
PkrI	GCNGC	2 cut(s)	762, 1012
PscI	ACATGT	1 cut(s)	834
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	42
PstI	CTGCAG	3 cut(s)	14, 724, 943
PsuI	RGATCY	1 cut(s)	642
PvuII	CAGCTG	1 cut(s)	892
RsaI	GTAC	2 cut(s)	42, 833
RsaNI	GTAC	2 cut(s)	41, 832
SaqAI	TTAA	4 cut(s)	378, 551, 665, 776
SatI	GCNGC	2 cut(s)	761, 1011
Sau3AI	GATC	2 cut(s)	151, 642
SbfI	CCTGCAGG	1 cut(s)	943
ScrFI	CCNGG	2 cut(s)	239, 432
SdaI	CCTGCAGG	1 cut(s)	943
SfaNI	GCATC	1 cut(s)	694
SfcI	CTRYAG	3 cut(s)	10, 720, 939
SmlI	CTYRAG	3 cut(s)	764, 812, 965
SmoI	CTYRAG	3 cut(s)	764, 812, 965
Sse8387I	CCTGCAGG	1 cut(s)	943
SseBI	AGGCCT	1 cut(s)	249
SsiI	CCGC	1 cut(s)	1010
SspMI	CTAG	2 cut(s)	674, 956
StuI	AGGCCT	1 cut(s)	249
StyD4I	CCNGG	2 cut(s)	237, 430
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	900
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	705
TatI	WGTACW	1 cut(s)	831
TauI	GCSGC	1 cut(s)	1013
TfiI	GAWTC	2 cut(s)	101, 526
Tru1I	TTAA	4 cut(s)	378, 551, 665, 776
Tru9I	TTAA	4 cut(s)	378, 551, 665, 776
TscAI	CASTG	4 cut(s)	112, 568, 745, 873
TseFI	GTSAC	1 cut(s)	868
TseI	GCWGC	1 cut(s)	760
Tsp45I	GTSAC	1 cut(s)	868
TspDTI	ATGAA	4 cut(s)	46, 283, 426, 536
TspRI	CASTG	4 cut(s)	112, 568, 745, 873
Van91I	CCANNNNNTGG	1 cut(s)	656
XapI	RAATTY	5 cut(s)	128, 354, 678, 861, 970
XceI	RCATGY	2 cut(s)	219, 838
XspI	CTAG	2 cut(s)	674, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.