Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0030002

Physical Location & Seq

Genomic Coordinates Forward (+)

45614731 .. 45615681

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025407

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCTGCCAACAAGTTCTCCCTAAATGATTGCAACACTCTGCTCAAATTCAAGGAGGAGCTAACAATTGATCCCGAAGGTCATCTTCAAACTTGGAACGAAGCCAATCCCTTCTGCAACTGGACTGGAATTACATGCCACCAACGTCTCCAAAACCAGGTTATAGGCCTTGAACTGATAGATATGGGCTTCCAAGGAAGGATATCACCATTCATATCCAACCTCTCTCTTCTTACCAACCTGTCTTTACAAAGCAATGGGTTCCATGGACAAATTCCATCTTCCTTGGGAATACTTAAAGATTTGGCATTTCTGAATGTGAGCTCAAACAAGCTTGAAGGTAGCATTCCAGGTTCATTACATGGTTGCCAAAGCTTGAAAGTCATAGACTTGACTTACAACAATCTATCTGGTGTTCTTCCTAAAGAACTCGGCTGGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009960 GO:0010154 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

148

Amino Acids

16.18

Weight (kDa)

5.72

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	9 - 46	4.3e-12	Leucine rich repeat N-terminal domain
LRR_8	PF13855	78 - 136	2.6e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030002)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0454861
rosa_laevigata	RLG00000025407

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	65
AcsI	RAATTY	2 cut(s)	47, 273
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	5 cut(s)	52, 89, 173, 338, 379
AjnI	CCWGG	2 cut(s)	156, 349
AluBI	AGCT	4 cut(s)	61, 324, 334, 375
AluI	AGCT	4 cut(s)	61, 324, 334, 375
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	47, 273
AsuHPI	GGTGA	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	326
BccI	CCATC	1 cut(s)	286
BciT130I	CCWGG	2 cut(s)	158, 351
BcoDI	GTCTC	1 cut(s)	152
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	158, 351
BmiI	GGNNCC	1 cut(s)	263
BmrFI	CCNGG	2 cut(s)	158, 351
BsaJI	CCNNGG	3 cut(s)	193, 265, 285
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	125, 130
Bse3DI	GCAATG	1 cut(s)	262
BseBI	CCWGG	2 cut(s)	158, 351
BseDI	CCNNGG	3 cut(s)	193, 265, 285
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	262
BseNI	ACTGG	2 cut(s)	125, 130
BseRI	GAGGAG	1 cut(s)	71
BseYI	CCCAGC	1 cut(s)	435
BshFI	GGCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	152
BsmBI	CGTCTC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	345
BsnI	GGCC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	1 cut(s)	70
Bsp19I	CCATGG	1 cut(s)	265
BspANI	GGCC	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	125, 130
BssECI	CCNNGG	3 cut(s)	193, 265, 285
BssMI	GATC	1 cut(s)	70
BssT1I	CCWWGG	3 cut(s)	193, 265, 285
Bst2UI	CCWGG	2 cut(s)	158, 351
Bst6I	CTCTTC	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	70
BstNI	CCWGG	2 cut(s)	158, 351
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	2 cut(s)	156, 349
BsuRI	GGCC	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	265
CsiI	ACCWGGT	1 cut(s)	156
CviAII	CATG	3 cut(s)	135, 266, 362
CviJI	RGCY	9 cut(s)	5, 61, 104, 168, 189, 324, 334, 375, 435
CviKI_1	RGCY	9 cut(s)	5, 61, 104, 168, 189, 324, 334, 375, 435
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	324
Eco130I	CCWWGG	3 cut(s)	193, 265, 285
Eco147I	AGGCCT	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	326
Eco32I	GATATC	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	324
EcoRII	CCWGG	2 cut(s)	156, 349
EcoRV	GATATC	1 cut(s)	204
EcoT14I	CCWWGG	3 cut(s)	193, 265, 285
EcoT38I	GRGCYC	1 cut(s)	326
ErhI	CCWWGG	3 cut(s)	193, 265, 285
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	3 cut(s)	138, 269, 365
FaiI	YATR	7 cut(s)	136, 164, 185, 215, 267, 363, 386
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FatI	CATG	3 cut(s)	134, 265, 361
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	439
HaeIII	GGCC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	138, 269, 365
HindIII	AAGCTT	2 cut(s)	332, 373
HphI	GGTGA	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	1 cut(s)	74
HpyAV	CCTTC	4 cut(s)	71, 121, 192, 332
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	33, 117
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	3 cut(s)	138, 269, 365
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	9 cut(s)	106, 111, 143, 170, 254, 336, 363, 396, 421
MabI	ACCWGGT	1 cut(s)	156
MaeII	ACGT	1 cut(s)	145
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	4 cut(s)	77, 221, 273, 410
MfeI	CAATTG	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	326
MluCI	AATT	4 cut(s)	47, 66, 129, 273
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	2 cut(s)	49, 233
MseI	TTAA	1 cut(s)	297
MspR9I	CCNGG	2 cut(s)	158, 351
MunI	CAATTG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	345
MvaI	CCWGG	2 cut(s)	158, 351
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	3 cut(s)	138, 269, 365
NlaIV	GGNNCC	1 cut(s)	263
NmeAIII	GCCGAG	1 cut(s)	411
NspI	RCATGY	1 cut(s)	138
PceI	AGGCCT	1 cut(s)	168
PctI	GAATGC	1 cut(s)	345
PkrI	GCNGC	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	326
Psp6I	CCWGG	2 cut(s)	156, 349
PspFI	CCCAGC	1 cut(s)	435
PspGI	CCWGG	2 cut(s)	156, 349
PspN4I	GGNNCC	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	158, 351
SduI	GDGCHC	1 cut(s)	326
SexAI	ACCWGGT	1 cut(s)	156
Sse9I	AATT	4 cut(s)	47, 66, 129, 273
SseBI	AGGCCT	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	326
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	156, 349
StyI	CCWWGG	3 cut(s)	193, 265, 285
TaiI	ACGT	1 cut(s)	148
TasI	AATT	4 cut(s)	47, 66, 129, 273
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	202, 345
XapI	RAATTY	2 cut(s)	47, 273
XceI	RCATGY	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.