RchiOBHm_Chr3g0455831

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0022701
Physical Location & Seq
Forward (+)
5421163 .. 5421937
775 bp
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UTR
Exon/CDS
Intron
PRQ42274

Sequence Viewer

Length: 393 bp
ATGTACACATTAGGTACTGATTCTTGGAAAGAGATCCAGACTGATTATCTAGAAACCGGAAGCGCAATCTTTTGGCCTACTGATTTCGAGTTGAACTTTCAGGGAAACCTTTATTGGTTGGGATATGAGGGAAAGAAGGAATTCGGCTCTCAAATTGGTAGGTATAATGGGAAATTCGAGCGTGTGATCATTTTGTTTGATACGAGTGTTGAGGCTCTTCGTACTATGTTGCTTCCGTACAGCTTCTACGAGCCAGGGCACCAATCATATGGTTACACCGCGAACGCGCACCTTTCAATATGGCATGACACCATTGCTGTTTTTGGTTTCCATCTTCACCTCGAGTCATTTCACTTGTGGGTAGTGGATGACTGGTGGTGCCCGTGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

130

Amino Acids

15.48

Weight (kDa)

4.87

Isoelectric Point (pI)

19.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 2 - 120 1.7e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022701)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0455831
rosa_multiflora Rmu_co8406411.1_g000001 Rmu_sc0015063.1_g000003
rosa_rugosa Rorug03G0010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 258, 378
AccII CGCG 2 cut(s) 281, 287
AciI CCGC 1 cut(s) 279
AclWI GGATC 1 cut(s) 28
AcsI RAATTY 2 cut(s) 140, 173
AfaI GTAC 4 cut(s) 5, 16, 223, 239
AgsI TTSAA 2 cut(s) 94, 297
AjnI CCWGG 1 cut(s) 253
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AluBI AGCT 1 cut(s) 243
AluI AGCT 1 cut(s) 243
AlwI GGATC 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 1 cut(s) 74
ApoI RAATTY 2 cut(s) 140, 173
Asp700I GAANNNNTTC 1 cut(s) 140
AspLEI GCGC 2 cut(s) 65, 289
AsuHPI GGTGA 1 cut(s) 329
AvaI CYCGRG 1 cut(s) 341
BaeGI GKGCMC 2 cut(s) 261, 383
BaeI ACNNNNGTAYC 2 cut(s) 192, 225
BanI GGYRCC 2 cut(s) 258, 378
BccI CCATC 1 cut(s) 339
BciT130I CCWGG 1 cut(s) 255
BclI TGATCA 1 cut(s) 186
BfaI CTAG 1 cut(s) 50
Bme1390I CCNGG 1 cut(s) 255
BmeT110I CYCGRG 1 cut(s) 341
BmiI GGNNCC 2 cut(s) 260, 380
BmrFI CCNGG 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 254, 383
BsaWI WCCGGW 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 377
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 254, 383
BseGI GGATG 1 cut(s) 373
BseMI GCAATG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 377
BseSI GKGCMC 2 cut(s) 261, 383
Bsh1236I CGCG 2 cut(s) 281, 287
BshFI GGCC 1 cut(s) 76
BshNI GGYRCC 2 cut(s) 258, 378
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 1 cut(s) 57
BsnI GGCC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 2 cut(s) 261, 383
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 33, 186
BspACI CCGC 1 cut(s) 279
BspANI GGCC 1 cut(s) 76
BspFNI CGCG 2 cut(s) 281, 287
BspLI GGNNCC 2 cut(s) 260, 380
BspPI GGATC 1 cut(s) 28
BspQI GCTCTTC 1 cut(s) 222
BspT107I GGYRCC 2 cut(s) 258, 378
BsrDI GCAATG 1 cut(s) 312
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 254, 383
BssMI GATC 2 cut(s) 33, 186
Bst2UI CCWGG 1 cut(s) 255
Bst6I CTCTTC 1 cut(s) 222
BstAUI TGTACA 1 cut(s) 3
BstDSI CCRYGG 1 cut(s) 383
BstF5I GGATG 1 cut(s) 373
BstFNI CGCG 2 cut(s) 281, 287
BstHHI GCGC 2 cut(s) 65, 289
BstKTI GATC 2 cut(s) 36, 189
BstMBI GATC 2 cut(s) 33, 186
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstSLI GKGCMC 2 cut(s) 261, 383
BstUI CGCG 2 cut(s) 281, 287
BstX2I RGATCY 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 269
BstYI RGATCY 1 cut(s) 33
BsuRI GGCC 1 cut(s) 76
BtgI CCRYGG 1 cut(s) 383
BtsCI GGATG 1 cut(s) 373
CfoI GCGC 2 cut(s) 65, 289
Csp6I GTAC 4 cut(s) 4, 15, 222, 238
CviAII CATG 1 cut(s) 305
CviJI RGCY 5 cut(s) 76, 147, 215, 243, 253
CviKI_1 RGCY 5 cut(s) 76, 147, 215, 243, 253
CviQI GTAC 4 cut(s) 4, 15, 222, 238
DpnI GATC 2 cut(s) 35, 188
DpnII GATC 2 cut(s) 33, 186
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco88I CYCGRG 1 cut(s) 341
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 253
FaeI CATG 1 cut(s) 308
FaiI YATR 7 cut(s) 126, 165, 227, 268, 270, 301, 306
FatI CATG 1 cut(s) 304
FauNDI CATATG 1 cut(s) 268
FbaI TGATCA 1 cut(s) 186
FokI GGATG 1 cut(s) 380
FspBI CTAG 1 cut(s) 50
GlaI GCGC 2 cut(s) 64, 288
HaeIII GGCC 1 cut(s) 76
HapII CCGG 1 cut(s) 57
HhaI GCGC 2 cut(s) 65, 289
Hin1II CATG 1 cut(s) 308
Hin6I GCGC 2 cut(s) 63, 287
HinP1I GCGC 2 cut(s) 63, 287
HinfI GANTC 2 cut(s) 20, 344
HpaII CCGG 1 cut(s) 57
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 6
Hpy188III TCNNGA 2 cut(s) 37, 50
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 130
Hsp92II CATG 1 cut(s) 308
HspAI GCGC 2 cut(s) 63, 287
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 2 cut(s) 33, 186
LguI GCTCTTC 1 cut(s) 222
LpnPI CCDG 6 cut(s) 50, 70, 86, 240, 267, 358
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 272
MalI GATC 2 cut(s) 35, 188
MboI GATC 2 cut(s) 33, 186
MboII GAAGA 2 cut(s) 209, 326
MflI RGATCY 1 cut(s) 33
MhlI GDGCHC 2 cut(s) 261, 383
MluCI AATT 3 cut(s) 140, 153, 173
MlyI GAGTC 1 cut(s) 353
MnlI CCTC 3 cut(s) 121, 205, 350
MroXI GAANNNNTTC 1 cut(s) 140
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MvnI CGCG 2 cut(s) 281, 287
NdeI CATATG 1 cut(s) 268
NdeII GATC 2 cut(s) 33, 186
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 2 cut(s) 260, 380
PaeR7I CTCGAG 1 cut(s) 341
PciSI GCTCTTC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 20
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 260, 380
PspXI VCTCGAGB 1 cut(s) 341
PsuI RGATCY 1 cut(s) 33
RsaI GTAC 4 cut(s) 5, 16, 223, 239
RsaNI GTAC 4 cut(s) 4, 15, 222, 238
SapI GCTCTTC 1 cut(s) 222
Sau3AI GATC 2 cut(s) 33, 186
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 2 cut(s) 261, 383
SetI ASST 6 cut(s) 16, 111, 164, 245, 294, 342
Sfr274I CTCGAG 1 cut(s) 341
SlaI CTCGAG 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 3 cut(s) 140, 153, 173
SsiI CCGC 1 cut(s) 279
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 253
TaqI TCGA 3 cut(s) 87, 177, 342
TasI AATT 3 cut(s) 140, 153, 173
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 20
TspGWI ACGGA 1 cut(s) 225
XapI RAATTY 2 cut(s) 140, 173
XbaI TCTAGA 1 cut(s) 49
XhoI CTCGAG 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.