Rmu_co8406411.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8406411.1
OG0022701
Physical Location & Seq
Forward (+)
165 .. 1203
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8406411.1_g000001.1.cds

Sequence Viewer

Length: 825 bp
atgacagagttttgcaaaatgcaagaagaagcattggtggcgcaaattctatcaaggttgcctcccagatctctaatgagattcaaatgcatccgtaagtcatggcatgcactcatcaatagcccttggtttgcatcccaacacctccaagtgtacaacaaactctcctcctctactcgaatcctattgaagcgttgcgtcagcattagaaccgaagctaacgaggaggaaattgtgtttcatgtcttaatcttcctaataatgccggtgaccacgaaaacaaaaatcttccttgtgttgttgaggacctcgtttttccaccttctttgggtttacaaactaggggccaatatattgagctccctggcggtgatggcactgtacatattgagactacgagaataccattctcttcatattcccaaggcagaaatgtacacattaggtactgattcttggaaagagatccagactgattatctagaaaccggaagcgcaatcttttggcctactgatttcgagttgtactttcagggaaacctttattggttgggatatgagggaaagaaggaattcggctctcaaattggtaggtataatgggaaattcgagcgtgtgatcattttgtttgatacgagtgttgaggctcttcgtactatgttgcttccggatagcttctacgagccagggcaccaatcatatggttacaccgcgaacgcgcacctttcaatatggcatgacaccattgctgtttttggtttccatcttcacctcgagtcatttcacttatgggtagtggatgactggtggtgcccgtggtggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

274

Amino Acids

32.38

Weight (kDa)

7.2

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022701)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0455831
rosa_multiflora Rmu_co8406411.1_g000001 Rmu_sc0015063.1_g000003
rosa_rugosa Rorug03G0010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 690, 810
AccII CGCG 2 cut(s) 713, 719
AccIII TCCGGA 1 cut(s) 667
AciI CCGC 2 cut(s) 368, 711
AclWI GGATC 1 cut(s) 460
AcsI RAATTY 3 cut(s) 45, 572, 605
AfaI GTAC 6 cut(s) 155, 383, 437, 448, 527, 655
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 3 cut(s) 85, 190, 729
AjnI CCWGG 2 cut(s) 363, 685
AjuI GAANNNNNNNTTGG 2 cut(s) 529, 561
AluBI AGCT 3 cut(s) 218, 360, 675
AluI AGCT 3 cut(s) 218, 360, 675
Alw21I GWGCWC 1 cut(s) 362
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 1 cut(s) 460
Ama87I CYCGRG 1 cut(s) 773
Aor13HI TCCGGA 1 cut(s) 667
AoxI GGCC 2 cut(s) 345, 506
ApoI RAATTY 3 cut(s) 45, 572, 605
Asp700I GAANNNNTTC 1 cut(s) 572
AspLEI GCGC 3 cut(s) 43, 497, 721
AspS9I GGNCC 2 cut(s) 306, 345
AsuHPI GGTGA 3 cut(s) 280, 382, 761
AvaI CYCGRG 1 cut(s) 773
AvaII GGWCC 1 cut(s) 306
BaeGI GKGCMC 2 cut(s) 693, 815
BaeI ACNNNNGTAYC 2 cut(s) 624, 657
BanI GGYRCC 2 cut(s) 690, 810
BanII GRGCYC 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 362
BccI CCATC 2 cut(s) 367, 771
BciT130I CCWGG 2 cut(s) 365, 687
BclI TGATCA 1 cut(s) 618
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 2 cut(s) 341, 482
BglII AGATCT 1 cut(s) 68
Bme1390I CCNGG 2 cut(s) 365, 687
Bme18I GGWCC 1 cut(s) 306
BmeT110I CYCGRG 1 cut(s) 773
BmgT120I GGNCC 2 cut(s) 306, 345
BmiI GGNNCC 3 cut(s) 346, 692, 812
BmrFI CCNGG 2 cut(s) 365, 687
BmsI GCATC 2 cut(s) 99, 143
BsaJI CCNNGG 5 cut(s) 125, 363, 423, 686, 815
BsaWI WCCGGW 2 cut(s) 488, 667
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse118I RCCGGY 1 cut(s) 265
Bse1I ACTGG 1 cut(s) 809
Bse3DI GCAATG 1 cut(s) 744
BseAI TCCGGA 1 cut(s) 667
BseBI CCWGG 2 cut(s) 365, 687
BseDI CCNNGG 5 cut(s) 125, 363, 423, 686, 815
BseGI GGATG 3 cut(s) 90, 134, 805
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 1 cut(s) 744
BseNI ACTGG 1 cut(s) 809
BseRI GAGGAG 3 cut(s) 157, 160, 239
BseSI GKGCMC 2 cut(s) 693, 815
Bsh1236I CGCG 2 cut(s) 713, 719
BshFI GGCC 2 cut(s) 347, 508
BshNI GGYRCC 2 cut(s) 690, 810
BsiHKAI GWGCWC 1 cut(s) 362
BsiHKCI CYCGRG 1 cut(s) 773
BsiSI CCGG 3 cut(s) 266, 489, 668
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 385
BsnI GGCC 2 cut(s) 347, 508
BsoBI CYCGRG 1 cut(s) 773
Bsp1286I GDGCHC 3 cut(s) 362, 693, 815
Bsp13I TCCGGA 1 cut(s) 667
Bsp1407I TGTACA 3 cut(s) 153, 381, 435
Bsp143I GATC 3 cut(s) 68, 465, 618
BspACI CCGC 2 cut(s) 368, 711
BspANI GGCC 2 cut(s) 347, 508
BspEI TCCGGA 1 cut(s) 667
BspFNI CGCG 2 cut(s) 713, 719
BspLI GGNNCC 3 cut(s) 346, 692, 812
BspPI GGATC 1 cut(s) 460
BspQI GCTCTTC 1 cut(s) 654
BspT107I GGYRCC 2 cut(s) 690, 810
BsrDI GCAATG 1 cut(s) 744
BsrFI RCCGGY 1 cut(s) 265
BsrGI TGTACA 3 cut(s) 153, 381, 435
BsrI ACTGG 1 cut(s) 809
BssAI RCCGGY 1 cut(s) 265
BssECI CCNNGG 5 cut(s) 125, 363, 423, 686, 815
BssMI GATC 3 cut(s) 68, 465, 618
BssT1I CCWWGG 2 cut(s) 125, 423
Bst2UI CCWGG 2 cut(s) 365, 687
Bst4CI ACNGT 1 cut(s) 381
Bst6I CTCTTC 2 cut(s) 417, 654
BstAUI TGTACA 3 cut(s) 153, 381, 435
BstC8I GCNNGC 1 cut(s) 108
BstDSI CCRYGG 1 cut(s) 815
BstEII GGTNACC 1 cut(s) 268
BstF5I GGATG 3 cut(s) 90, 134, 805
BstFNI CGCG 2 cut(s) 713, 719
BstHHI GCGC 3 cut(s) 43, 497, 721
BstKTI GATC 3 cut(s) 71, 468, 621
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 3 cut(s) 68, 465, 618
BstMWI GCNNNNNNNGC 2 cut(s) 38, 374
BstNI CCWGG 2 cut(s) 365, 687
BstNSI RCATGY 1 cut(s) 110
BstPI GGTNACC 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 363, 685
BstSLI GKGCMC 2 cut(s) 693, 815
BstUI CGCG 2 cut(s) 713, 719
BstX2I RGATCY 2 cut(s) 68, 465
BstXI CCANNNNNNTGG 1 cut(s) 701
BstYI RGATCY 2 cut(s) 68, 465
BsuRI GGCC 2 cut(s) 347, 508
BtgI CCRYGG 1 cut(s) 815
BtsCI GGATG 3 cut(s) 90, 134, 805
BtsIMutI CAGTG 1 cut(s) 377
Cac8I GCNNGC 1 cut(s) 108
CfoI GCGC 3 cut(s) 43, 497, 721
Cfr10I RCCGGY 1 cut(s) 265
Cfr13I GGNCC 2 cut(s) 306, 345
CseI GACGC 1 cut(s) 187
Csp6I GTAC 6 cut(s) 154, 382, 436, 447, 526, 654
CspCI CAANNNNNGTGG 2 cut(s) 308, 343
CviAII CATG 4 cut(s) 102, 107, 242, 737
CviJI RGCY 9 cut(s) 123, 218, 347, 360, 508, 579, 647, 675, 685
CviKI_1 RGCY 9 cut(s) 123, 218, 347, 360, 508, 579, 647, 675, 685
CviQI GTAC 6 cut(s) 154, 382, 436, 447, 526, 654
DpnI GATC 3 cut(s) 70, 467, 620
DpnII GATC 3 cut(s) 68, 465, 618
Eam1104I CTCTTC 2 cut(s) 417, 654
EarI CTCTTC 2 cut(s) 417, 654
Ecl136II GAGCTC 1 cut(s) 360
Eco130I CCWWGG 2 cut(s) 125, 423
Eco24I GRGCYC 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 306
Eco53kI GAGCTC 1 cut(s) 360
Eco88I CYCGRG 1 cut(s) 773
Eco91I GGTNACC 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 360
EcoO109I RGGNCCY 1 cut(s) 306
EcoO65I GGTNACC 1 cut(s) 268
EcoRI GAATTC 1 cut(s) 572
EcoRII CCWGG 2 cut(s) 363, 685
EcoT14I CCWWGG 2 cut(s) 125, 423
EcoT22I ATGCAT 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 362
ErhI CCWWGG 2 cut(s) 125, 423
FaeI CATG 4 cut(s) 105, 110, 245, 740
FatI CATG 4 cut(s) 101, 106, 241, 736
FauNDI CATATG 1 cut(s) 700
FbaI TGATCA 1 cut(s) 618
FokI GGATG 3 cut(s) 77, 121, 812
FriOI GRGCYC 1 cut(s) 362
FspBI CTAG 2 cut(s) 341, 482
GlaI GCGC 3 cut(s) 42, 496, 720
HaeIII GGCC 2 cut(s) 347, 508
HapII CCGG 3 cut(s) 266, 489, 668
HgaI GACGC 1 cut(s) 187
HhaI GCGC 3 cut(s) 43, 497, 721
Hin1II CATG 4 cut(s) 105, 110, 245, 740
Hin6I GCGC 3 cut(s) 41, 495, 719
HinP1I GCGC 3 cut(s) 41, 495, 719
HinfI GANTC 4 cut(s) 81, 180, 452, 776
HpaII CCGG 3 cut(s) 266, 489, 668
HphI GGTGA 3 cut(s) 280, 382, 761
Hpy166II GTNNAC 3 cut(s) 154, 334, 438
Hpy188III TCNNGA 3 cut(s) 469, 482, 668
Hpy8I GTNNAC 3 cut(s) 154, 334, 438
HpyAV CCTTC 2 cut(s) 332, 562
HpyCH4III ACNGT 1 cut(s) 381
HpyCH4V TGCA 5 cut(s) 15, 22, 90, 110, 134
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 374
Hsp92II CATG 4 cut(s) 105, 110, 245, 740
HspAI GCGC 3 cut(s) 41, 495, 719
Kpn2I TCCGGA 1 cut(s) 667
Ksp22I TGATCA 1 cut(s) 618
Kzo9I GATC 3 cut(s) 68, 465, 618
LguI GCTCTTC 1 cut(s) 654
LmnI GCTCC 1 cut(s) 365
LweI GCATC 2 cut(s) 99, 143
MaeI CTAG 2 cut(s) 341, 482
MaeIII GTNAC 2 cut(s) 268, 704
MalI GATC 3 cut(s) 70, 467, 620
MboI GATC 3 cut(s) 68, 465, 618
MboII GAAGA 6 cut(s) 38, 244, 280, 404, 641, 758
MflI RGATCY 2 cut(s) 68, 465
MhlI GDGCHC 3 cut(s) 362, 693, 815
MluCI AATT 5 cut(s) 45, 231, 572, 585, 605
MlyI GAGTC 1 cut(s) 785
Mph1103I ATGCAT 1 cut(s) 92
MroI TCCGGA 1 cut(s) 667
MroXI GAANNNNTTC 1 cut(s) 572
MseI TTAA 1 cut(s) 248
MspI CCGG 3 cut(s) 266, 489, 668
MspR9I CCNGG 2 cut(s) 365, 687
MvaI CCWGG 2 cut(s) 365, 687
MvnI CGCG 2 cut(s) 713, 719
MwoI GCNNNNNNNGC 2 cut(s) 38, 374
NdeI CATATG 1 cut(s) 700
NdeII GATC 3 cut(s) 68, 465, 618
NlaIII CATG 4 cut(s) 105, 110, 245, 740
NlaIV GGNNCC 3 cut(s) 346, 692, 812
NmuCI GTSAC 1 cut(s) 268
NsiI ATGCAT 1 cut(s) 92
NspI RCATGY 1 cut(s) 110
PaeI GCATGC 1 cut(s) 110
PaeR7I CTCGAG 1 cut(s) 773
PciSI GCTCTTC 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 572
PfeI GAWTC 3 cut(s) 81, 180, 452
PleI GAGTC 1 cut(s) 784
PpsI GAGTC 1 cut(s) 784
PpuMI RGGWCCY 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 362
Psp5II RGGWCCY 1 cut(s) 306
Psp6I CCWGG 2 cut(s) 363, 685
PspEI GGTNACC 1 cut(s) 268
PspGI CCWGG 2 cut(s) 363, 685
PspN4I GGNNCC 3 cut(s) 346, 692, 812
PspPI GGNCC 2 cut(s) 306, 345
PspPPI RGGWCCY 1 cut(s) 306
PspXI VCTCGAGB 1 cut(s) 773
PsuI RGATCY 2 cut(s) 68, 465
RsaI GTAC 6 cut(s) 155, 383, 437, 448, 527, 655
RsaNI GTAC 6 cut(s) 154, 382, 436, 447, 526, 654
SacI GAGCTC 1 cut(s) 362
SapI GCTCTTC 1 cut(s) 654
SaqAI TTAA 1 cut(s) 248
Sau3AI GATC 3 cut(s) 68, 465, 618
Sau96I GGNCC 2 cut(s) 306, 345
SchI GAGTC 1 cut(s) 785
ScrFI CCNGG 2 cut(s) 365, 687
SduI GDGCHC 3 cut(s) 362, 693, 815
SfaNI GCATC 2 cut(s) 99, 143
Sfr274I CTCGAG 1 cut(s) 773
SinI GGWCC 1 cut(s) 306
SlaI CTCGAG 1 cut(s) 773
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
SphI GCATGC 1 cut(s) 110
Sse9I AATT 5 cut(s) 45, 231, 572, 585, 605
SsiI CCGC 2 cut(s) 368, 711
SspMI CTAG 2 cut(s) 341, 482
SstI GAGCTC 1 cut(s) 362
StyD4I CCNGG 2 cut(s) 363, 685
StyI CCWWGG 2 cut(s) 125, 423
TaaI ACNGT 1 cut(s) 381
TaqI TCGA 4 cut(s) 178, 519, 609, 774
TasI AATT 5 cut(s) 45, 231, 572, 585, 605
TatI WGTACW 4 cut(s) 153, 381, 435, 525
TfiI GAWTC 3 cut(s) 81, 180, 452
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 1 cut(s) 384
TseFI GTSAC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 230, 404
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 1 cut(s) 384
VpaK11BI GGWCC 1 cut(s) 306
XapI RAATTY 3 cut(s) 45, 572, 605
XbaI TCTAGA 1 cut(s) 481
XceI RCATGY 1 cut(s) 110
XhoI CTCGAG 1 cut(s) 773
XmnI GAANNNNTTC 1 cut(s) 572
XspI CTAG 2 cut(s) 341, 482
Zsp2I ATGCAT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.