RchiOBHm_Chr3g0467661
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0030000
Physical Location & Seq
Forward (+)
13754161 .. 13755337
1177 bp
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UTR
Exon/CDS
Intron
PRQ43361

Sequence Viewer

Length: 669 bp
ATGGTATTGGGAAGTTTCAGGACCACTCCATCTTATGTTGCCTTCAATGATACTGAGCGTTTGGTTGGTGATGCAGCTTTCAACCAGGTCATCAAGAACCCCATCAATTCCGTATTTGGTAGGCTCTGGCCATTCAAGGTCATTGAAGGTGTTGATGACAAGCCTATGATTGTGGTTAGCCATGAGGGTCAAGAGAGACAGTTTGCTGCTGAAGAGATCTCCTCCATGGTTTTGGTAAAGATGCGGGAGATTGCTGAGGAGTTCCTTAACTCGACAGCAAAAAATGCAGTTATCACAGTCCCTGCTTACTTCAGTGACTCGCAGCGCCAGGCTACCAGAAATGCAGGTGAGTTTGCAGGCCTAAAGGTAATGCGTATTATCAATGAGCCAACAGCTGCAGCAATTGCTTATGGCCTTCAAAACAAGGCCGGTTGGTATAGCAAGAGATATGTGATGATCTTTGATTTGGGTGGTGGAACTTTAGATGTCTCACTGCTTACGATTAGTTCTGGTGTCTTCGAACTGAAAGCCACGGCTGGAGACACTCACCTTGGTGGTGAAGATTTTGATAACAGAATGGTGGATTTCTGTGCTGCAGAATTTAAGAGGAAGCATGACTTGGATGTGAGTGGAAACTCGAGAGCTCTTAGGAGGCTAAGAAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

222

Amino Acids

24.55

Weight (kDa)

6.33

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 5 - 222 4.1e-83 Hsp70 protein
MreB_Mbl PF06723 80 - 202 2.4e-10 MreB/Mbl protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030000)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0467661
rosa_samantha Rh3AG137200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 335
Acc36I ACCTGC 1 cut(s) 335
AciI CCGC 1 cut(s) 244
AcoI YGGCCR 1 cut(s) 128
AcsI RAATTY 1 cut(s) 599
AcuI CTGAAG 2 cut(s) 231, 295
AgsI TTSAA 5 cut(s) 46, 82, 136, 146, 419
AjnI CCWGG 2 cut(s) 84, 327
AjuI GAANNNNNNNTTGG 2 cut(s) 602, 634
AleI CACNNNNGTG 1 cut(s) 552
AluBI AGCT 3 cut(s) 77, 395, 644
AluI AGCT 3 cut(s) 77, 395, 644
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 3 cut(s) 190, 493, 534
AlwNI CAGNNNCTG 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 637
AoxI GGCC 4 cut(s) 128, 358, 412, 426
ApeKI GCWGC 6 cut(s) 74, 206, 322, 395, 398, 593
ApoI RAATTY 1 cut(s) 599
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 21
AsuHPI GGTGA 4 cut(s) 80, 359, 539, 569
AsuII TTCGAA 1 cut(s) 519
AvaI CYCGRG 1 cut(s) 637
AvaII GGWCC 1 cut(s) 21
BalI TGGCCA 1 cut(s) 130
BanII GRGCYC 1 cut(s) 646
BbsI GAAGAC 1 cut(s) 508
Bbv12I GWGCWC 1 cut(s) 646
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 6 cut(s) 86, 193, 334, 382, 410, 580
BccI CCATC 2 cut(s) 37, 110
BceAI ACGGC 1 cut(s) 549
BciT130I CCWGG 2 cut(s) 86, 329
BcoDI GTCTC 3 cut(s) 190, 493, 534
BfmI CTRYAG 2 cut(s) 396, 594
BfoI RGCGCY 1 cut(s) 328
BfuAI ACCTGC 1 cut(s) 335
BglII AGATCT 1 cut(s) 216
BisI GCNGC 6 cut(s) 75, 207, 323, 396, 399, 594
BlsI GCNGC 6 cut(s) 76, 208, 324, 397, 400, 595
Bme1390I CCNGG 2 cut(s) 86, 329
Bme18I GGWCC 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 637
BmgT120I GGNCC 1 cut(s) 21
BmrFI CCNGG 2 cut(s) 86, 329
BmsI GCATC 2 cut(s) 61, 231
BpiI GAAGAC 1 cut(s) 508
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BpmI CTGGAG 1 cut(s) 558
Bpu10I CCTNAGC 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 519
BsaJI CCNNGG 3 cut(s) 225, 531, 550
Bse118I RCCGGY 1 cut(s) 428
BseBI CCWGG 2 cut(s) 86, 329
BseDI CCNNGG 3 cut(s) 225, 531, 550
BseGI GGATG 1 cut(s) 628
BseMII CTCAG 2 cut(s) 45, 246
BseRI GAGGAG 2 cut(s) 211, 272
BseXI GCAGC 6 cut(s) 86, 193, 334, 382, 410, 580
BshFI GGCC 4 cut(s) 130, 360, 414, 428
BsiHKAI GWGCWC 1 cut(s) 646
BsiHKCI CYCGRG 1 cut(s) 637
BsiSI CCGG 1 cut(s) 429
BslFI GGGAC 1 cut(s) 284
BsmAI GTCTC 3 cut(s) 190, 493, 534
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 4 cut(s) 130, 360, 414, 428
BsoBI CYCGRG 1 cut(s) 637
Bsp119I TTCGAA 1 cut(s) 519
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 2 cut(s) 216, 456
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 1 cut(s) 244
BspANI GGCC 4 cut(s) 130, 360, 414, 428
BspCNI CTCAG 2 cut(s) 46, 247
BspMAI CTGCAG 2 cut(s) 400, 598
BspMI ACCTGC 1 cut(s) 335
BspT104I TTCGAA 1 cut(s) 519
BsrFI RCCGGY 1 cut(s) 428
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 3 cut(s) 225, 531, 550
BssMI GATC 2 cut(s) 216, 456
BssT1I CCWWGG 2 cut(s) 225, 550
Bst2UI CCWGG 2 cut(s) 86, 329
Bst4CI ACNGT 2 cut(s) 201, 298
Bst6I CTCTTC 1 cut(s) 207
BstAPI GCANNNNNTGC 2 cut(s) 284, 404
BstBI TTCGAA 1 cut(s) 519
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 4 cut(s) 54, 255, 647, 656
BstDSI CCRYGG 2 cut(s) 225, 531
BstF5I GGATG 1 cut(s) 628
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 2 cut(s) 219, 459
BstMAI GTCTC 3 cut(s) 190, 493, 534
BstMBI GATC 2 cut(s) 216, 456
BstMWI GCNNNNNNNGC 2 cut(s) 284, 404
BstNI CCWGG 2 cut(s) 86, 329
BstSCI CCNGG 2 cut(s) 84, 327
BstSFI CTRYAG 2 cut(s) 396, 594
BstV1I GCAGC 6 cut(s) 86, 193, 334, 382, 410, 580
BstV2I GAAGAC 1 cut(s) 508
BstX2I RGATCY 1 cut(s) 216
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 216
BsuRI GGCC 4 cut(s) 130, 360, 414, 428
BtgI CCRYGG 2 cut(s) 225, 531
BtsCI GGATG 1 cut(s) 628
BtsI GCAGTG 1 cut(s) 491
BtsIMutI CAGTG 2 cut(s) 319, 491
BveI ACCTGC 1 cut(s) 335
Cac8I GCNNGC 1 cut(s) 358
CaiI CAGNNNCTG 1 cut(s) 302
CfoI GCGC 1 cut(s) 327
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 21
CsiI ACCWGGT 1 cut(s) 84
CviAII CATG 3 cut(s) 182, 226, 614
DdeI CTNAG 4 cut(s) 54, 255, 647, 656
DpnI GATC 2 cut(s) 218, 458
DpnII GATC 2 cut(s) 216, 456
EaeI YGGCCR 1 cut(s) 128
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Ecl136II GAGCTC 1 cut(s) 644
Eco130I CCWWGG 2 cut(s) 225, 550
Eco147I AGGCCT 1 cut(s) 360
Eco24I GRGCYC 1 cut(s) 646
Eco47I GGWCC 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 644
Eco57I CTGAAG 2 cut(s) 231, 295
Eco88I CYCGRG 1 cut(s) 637
EcoICRI GAGCTC 1 cut(s) 644
EcoRII CCWGG 2 cut(s) 84, 327
EcoT14I CCWWGG 2 cut(s) 225, 550
EcoT38I GRGCYC 1 cut(s) 646
ErhI CCWWGG 2 cut(s) 225, 550
FaeI CATG 3 cut(s) 185, 229, 617
FaiI YATR 8 cut(s) 36, 167, 183, 227, 411, 438, 450, 615
FalI AAGNNNNNCTT 3 cut(s) 602, 634, 649
FaqI GGGAC 1 cut(s) 284
FatI CATG 3 cut(s) 181, 225, 613
FauI CCCGC 1 cut(s) 237
Fnu4HI GCNGC 6 cut(s) 75, 207, 323, 396, 399, 594
FokI GGATG 1 cut(s) 635
FriOI GRGCYC 1 cut(s) 646
Fsp4HI GCNGC 6 cut(s) 75, 207, 323, 396, 399, 594
GlaI GCGC 1 cut(s) 326
GluI GCNGC 6 cut(s) 75, 207, 323, 396, 399, 594
GsuI CTGGAG 1 cut(s) 558
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 4 cut(s) 130, 360, 414, 428
HapII CCGG 1 cut(s) 429
HhaI GCGC 1 cut(s) 327
Hin1II CATG 3 cut(s) 185, 229, 617
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HinfI GANTC 1 cut(s) 317
HpaII CCGG 1 cut(s) 429
HphI GGTGA 4 cut(s) 80, 359, 539, 569
Hpy188III TCNNGA 4 cut(s) 19, 94, 191, 639
HpyAV CCTTC 3 cut(s) 52, 140, 425
HpyCH4III ACNGT 2 cut(s) 201, 298
HpyCH4V TGCA 6 cut(s) 74, 287, 344, 356, 398, 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 404
HpyF3I CTNAG 4 cut(s) 54, 255, 647, 656
Hsp92II CATG 3 cut(s) 185, 229, 617
HspAI GCGC 1 cut(s) 325
Kzo9I GATC 2 cut(s) 216, 456
Lsp1109I GCAGC 6 cut(s) 86, 193, 334, 382, 410, 580
LweI GCATC 2 cut(s) 61, 231
MabI ACCWGGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 314
MalI GATC 2 cut(s) 218, 458
MboI GATC 2 cut(s) 216, 456
MboII GAAGA 3 cut(s) 224, 508, 572
MfeI CAATTG 1 cut(s) 402
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 646
MlsI TGGCCA 1 cut(s) 130
MluCI AATT 3 cut(s) 106, 402, 599
MluNI TGGCCA 1 cut(s) 130
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 5 cut(s) 178, 232, 250, 600, 645
Mox20I TGGCCA 1 cut(s) 130
MscI TGGCCA 1 cut(s) 130
MseI TTAA 2 cut(s) 267, 603
MslI CAYNNNNRTG 1 cut(s) 552
Msp20I TGGCCA 1 cut(s) 130
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 2 cut(s) 86, 329
MunI CAATTG 1 cut(s) 402
MvaI CCWGG 2 cut(s) 86, 329
MwoI GCNNNNNNNGC 2 cut(s) 284, 404
NcoI CCATGG 1 cut(s) 225
NdeII GATC 2 cut(s) 216, 456
NlaIII CATG 3 cut(s) 185, 229, 617
NmuCI GTSAC 1 cut(s) 314
NspV TTCGAA 1 cut(s) 519
OliI CACNNNNGTG 1 cut(s) 552
PaeR7I CTCGAG 1 cut(s) 637
PaqCI CACCTGC 1 cut(s) 335
PceI AGGCCT 1 cut(s) 360
PkrI GCNGC 6 cut(s) 76, 208, 324, 397, 400, 595
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
Psp124BI GAGCTC 1 cut(s) 646
Psp6I CCWGG 2 cut(s) 84, 327
PspGI CCWGG 2 cut(s) 84, 327
PspPI GGNCC 1 cut(s) 21
PstI CTGCAG 2 cut(s) 400, 598
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 216
PvuII CAGCTG 1 cut(s) 395
RseI CAYNNNNRTG 1 cut(s) 552
SacI GAGCTC 1 cut(s) 646
SaqAI TTAA 2 cut(s) 267, 603
SatI GCNGC 6 cut(s) 75, 207, 323, 396, 399, 594
Sau3AI GATC 2 cut(s) 216, 456
Sau96I GGNCC 1 cut(s) 21
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 86, 329
SduI GDGCHC 1 cut(s) 646
SetI ASST 9 cut(s) 79, 90, 141, 151, 349, 369, 397, 552, 646
SexAI ACCWGGT 1 cut(s) 84
SfaNI GCATC 2 cut(s) 61, 231
SfcI CTRYAG 2 cut(s) 396, 594
Sfr274I CTCGAG 1 cut(s) 637
SfuI TTCGAA 1 cut(s) 519
SinI GGWCC 1 cut(s) 21
SlaI CTCGAG 1 cut(s) 637
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 1 cut(s) 637
SmoI CTYRAG 1 cut(s) 637
Sse9I AATT 3 cut(s) 106, 402, 599
SseBI AGGCCT 1 cut(s) 360
SsiI CCGC 1 cut(s) 244
SstI GAGCTC 1 cut(s) 646
StuI AGGCCT 1 cut(s) 360
StyD4I CCNGG 2 cut(s) 84, 327
StyI CCWWGG 2 cut(s) 225, 550
TaaI ACNGT 2 cut(s) 201, 298
TaqI TCGA 3 cut(s) 272, 519, 638
TasI AATT 3 cut(s) 106, 402, 599
Tru1I TTAA 2 cut(s) 267, 603
Tru9I TTAA 2 cut(s) 267, 603
TscAI CASTG 2 cut(s) 319, 498
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 6 cut(s) 74, 206, 322, 395, 398, 593
Tsp45I GTSAC 1 cut(s) 314
TspGWI ACGGA 1 cut(s) 100
TspRI CASTG 2 cut(s) 319, 498
VpaK11BI GGWCC 1 cut(s) 21
XapI RAATTY 1 cut(s) 599
XhoI CTCGAG 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.