Rh3AG137200
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0030000
Physical Location & Seq
Forward (+)
11951624 .. 11952175
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG137200.1

Sequence Viewer

Length: 552 bp
ATGAAGCTCTGGCCATTCAAGGTCATTGAAGGTGTTGATGACAAGCCTATGATTGTGGTTAGCCATGAGGGTCAAGAGAGACAGTTTGCTGCTGAAGAGATCTCCTCCATGGTTTTGGTAAAGATGCGGGAGATTGCTGAGGAGTTCCTTAACTCGACAGCAAAAAATGCAGTTATCACAGTCCCTGCTTACTTCAGTGACTCGCAGCGCCAGGCTACCAGAAATGCAGGTGAGTTTGCAGGCCTAAAGGTAATGCGTATTATCAATGAGCCAACAGCTGCAGCAATTGCTTATGGCCTTCAAAACAAGGCCGGTTGGTATAGCAAGAGATATGTGATGATCTTTGATTTGGGTGGTGGAACTTTAGATGTCTCACTGCTTACGATTAGTTCTGGTGTCTTCGAACTGAAAGCCACGGCTGGAGACACTCACCTTGGTGGTGAAGATTTTGATAACAGAATGGTGGATTTCTGTGCTGCAGAATTTAAGAGGAAGCATGACTTGGATGTGAGTGGAAACTCGAGAGCTCTTAGGAGGCTAAGAAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

183

Amino Acids

20.3

Weight (kDa)

6.32

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 1 - 183 1.5e-75 Hsp70 protein
MreB_Mbl PF06723 41 - 163 1.4e-10 MreB/Mbl protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030000)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0467661
rosa_samantha Rh3AG137200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 218
Acc36I ACCTGC 1 cut(s) 218
AciI CCGC 1 cut(s) 127
AcoI YGGCCR 1 cut(s) 11
AcsI RAATTY 1 cut(s) 482
AcuI CTGAAG 2 cut(s) 114, 178
AgsI TTSAA 3 cut(s) 19, 29, 302
AjnI CCWGG 1 cut(s) 210
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
AleI CACNNNNGTG 1 cut(s) 435
AluBI AGCT 3 cut(s) 7, 278, 527
AluI AGCT 3 cut(s) 7, 278, 527
Alw21I GWGCWC 1 cut(s) 529
Alw26I GTCTC 3 cut(s) 73, 376, 417
AlwNI CAGNNNCTG 1 cut(s) 185
Ama87I CYCGRG 1 cut(s) 520
AoxI GGCC 4 cut(s) 11, 241, 295, 309
ApeKI GCWGC 5 cut(s) 89, 205, 278, 281, 476
ApoI RAATTY 1 cut(s) 482
AspLEI GCGC 1 cut(s) 210
AsuHPI GGTGA 3 cut(s) 242, 422, 452
AsuII TTCGAA 1 cut(s) 402
AvaI CYCGRG 1 cut(s) 520
BalI TGGCCA 1 cut(s) 13
BanII GRGCYC 1 cut(s) 529
BbsI GAAGAC 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 529
BbvCI CCTCAGC 1 cut(s) 138
BbvI GCAGC 5 cut(s) 76, 217, 265, 293, 463
BceAI ACGGC 1 cut(s) 432
BciT130I CCWGG 1 cut(s) 212
BcoDI GTCTC 3 cut(s) 73, 376, 417
BfmI CTRYAG 2 cut(s) 279, 477
BfoI RGCGCY 1 cut(s) 211
BfuAI ACCTGC 1 cut(s) 218
BglII AGATCT 1 cut(s) 99
BisI GCNGC 5 cut(s) 90, 206, 279, 282, 477
BlsI GCNGC 5 cut(s) 91, 207, 280, 283, 478
Bme1390I CCNGG 1 cut(s) 212
BmeT110I CYCGRG 1 cut(s) 520
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 391
BplI GAGNNNNNCTC 2 cut(s) 89, 121
BpmI CTGGAG 1 cut(s) 441
Bpu10I CCTNAGC 1 cut(s) 138
Bpu14I TTCGAA 1 cut(s) 402
BsaJI CCNNGG 3 cut(s) 108, 414, 433
Bse118I RCCGGY 1 cut(s) 311
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 3 cut(s) 108, 414, 433
BseGI GGATG 1 cut(s) 511
BseMII CTCAG 1 cut(s) 129
BseRI GAGGAG 2 cut(s) 94, 155
BseXI GCAGC 5 cut(s) 76, 217, 265, 293, 463
BshFI GGCC 4 cut(s) 13, 243, 297, 311
BsiHKAI GWGCWC 1 cut(s) 529
BsiHKCI CYCGRG 1 cut(s) 520
BsiSI CCGG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 167
BsmAI GTCTC 3 cut(s) 73, 376, 417
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 4 cut(s) 13, 243, 297, 311
BsoBI CYCGRG 1 cut(s) 520
Bsp119I TTCGAA 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 529
Bsp143I GATC 2 cut(s) 99, 339
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 1 cut(s) 127
BspANI GGCC 4 cut(s) 13, 243, 297, 311
BspCNI CTCAG 1 cut(s) 130
BspMAI CTGCAG 2 cut(s) 283, 481
BspMI ACCTGC 1 cut(s) 218
BspT104I TTCGAA 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 311
BssECI CCNNGG 3 cut(s) 108, 414, 433
BssMI GATC 2 cut(s) 99, 339
BssT1I CCWWGG 2 cut(s) 108, 433
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 2 cut(s) 84, 181
Bst6I CTCTTC 1 cut(s) 90
BstAPI GCANNNNNTGC 2 cut(s) 167, 287
BstBI TTCGAA 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 3 cut(s) 138, 530, 539
BstDSI CCRYGG 2 cut(s) 108, 414
BstF5I GGATG 1 cut(s) 511
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 2 cut(s) 102, 342
BstMAI GTCTC 3 cut(s) 73, 376, 417
BstMBI GATC 2 cut(s) 99, 339
BstMWI GCNNNNNNNGC 2 cut(s) 167, 287
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 2 cut(s) 279, 477
BstV1I GCAGC 5 cut(s) 76, 217, 265, 293, 463
BstV2I GAAGAC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 115
BstYI RGATCY 1 cut(s) 99
BsuRI GGCC 4 cut(s) 13, 243, 297, 311
BtgI CCRYGG 2 cut(s) 108, 414
BtsCI GGATG 1 cut(s) 511
BtsI GCAGTG 1 cut(s) 374
BtsIMutI CAGTG 2 cut(s) 202, 374
BveI ACCTGC 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 241
CaiI CAGNNNCTG 1 cut(s) 185
CfoI GCGC 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 311
CviAII CATG 3 cut(s) 65, 109, 497
DdeI CTNAG 3 cut(s) 138, 530, 539
DpnI GATC 2 cut(s) 101, 341
DpnII GATC 2 cut(s) 99, 339
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 527
Eco130I CCWWGG 2 cut(s) 108, 433
Eco147I AGGCCT 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 529
Eco53kI GAGCTC 1 cut(s) 527
Eco57I CTGAAG 2 cut(s) 114, 178
Eco88I CYCGRG 1 cut(s) 520
EcoICRI GAGCTC 1 cut(s) 527
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 2 cut(s) 108, 433
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 2 cut(s) 108, 433
FaeI CATG 3 cut(s) 68, 112, 500
FaiI YATR 7 cut(s) 50, 66, 110, 294, 321, 333, 498
FalI AAGNNNNNCTT 3 cut(s) 485, 517, 532
FaqI GGGAC 1 cut(s) 167
FatI CATG 3 cut(s) 64, 108, 496
FauI CCCGC 1 cut(s) 120
Fnu4HI GCNGC 5 cut(s) 90, 206, 279, 282, 477
FokI GGATG 1 cut(s) 518
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 5 cut(s) 90, 206, 279, 282, 477
GlaI GCGC 1 cut(s) 209
GluI GCNGC 5 cut(s) 90, 206, 279, 282, 477
GsuI CTGGAG 1 cut(s) 441
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 4 cut(s) 13, 243, 297, 311
HapII CCGG 1 cut(s) 312
HhaI GCGC 1 cut(s) 210
Hin1II CATG 3 cut(s) 68, 112, 500
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 312
HphI GGTGA 3 cut(s) 242, 422, 452
Hpy188III TCNNGA 2 cut(s) 74, 522
HpyAV CCTTC 2 cut(s) 23, 308
HpyCH4III ACNGT 2 cut(s) 84, 181
HpyCH4V TGCA 5 cut(s) 170, 227, 239, 281, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 287
HpyF3I CTNAG 3 cut(s) 138, 530, 539
Hsp92II CATG 3 cut(s) 68, 112, 500
HspAI GCGC 1 cut(s) 208
Kzo9I GATC 2 cut(s) 99, 339
LpnPI CCDG 9 cut(s) 197, 198, 213, 224, 225, 232, 325, 378, 405
Lsp1109I GCAGC 5 cut(s) 76, 217, 265, 293, 463
LweI GCATC 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 197
MalI GATC 2 cut(s) 101, 341
MboI GATC 2 cut(s) 99, 339
MboII GAAGA 3 cut(s) 107, 391, 455
MfeI CAATTG 1 cut(s) 285
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 529
MlsI TGGCCA 1 cut(s) 13
MluCI AATT 2 cut(s) 285, 482
MluNI TGGCCA 1 cut(s) 13
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 5 cut(s) 61, 115, 133, 483, 528
Mox20I TGGCCA 1 cut(s) 13
MscI TGGCCA 1 cut(s) 13
MseI TTAA 2 cut(s) 150, 486
MslI CAYNNNNRTG 1 cut(s) 435
Msp20I TGGCCA 1 cut(s) 13
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 212
MwoI GCNNNNNNNGC 2 cut(s) 167, 287
NcoI CCATGG 1 cut(s) 108
NdeII GATC 2 cut(s) 99, 339
NlaIII CATG 3 cut(s) 68, 112, 500
NmuCI GTSAC 1 cut(s) 197
NspV TTCGAA 1 cut(s) 402
OliI CACNNNNGTG 1 cut(s) 435
PaeR7I CTCGAG 1 cut(s) 520
PaqCI CACCTGC 1 cut(s) 218
PceI AGGCCT 1 cut(s) 243
PkrI GCNGC 5 cut(s) 91, 207, 280, 283, 478
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp124BI GAGCTC 1 cut(s) 529
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PstI CTGCAG 2 cut(s) 283, 481
PstNI CAGNNNCTG 1 cut(s) 185
PsuI RGATCY 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 435
SacI GAGCTC 1 cut(s) 529
SaqAI TTAA 2 cut(s) 150, 486
SatI GCNGC 5 cut(s) 90, 206, 279, 282, 477
Sau3AI GATC 2 cut(s) 99, 339
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 1 cut(s) 529
SetI ASST 8 cut(s) 9, 24, 34, 232, 252, 280, 435, 529
SfaNI GCATC 1 cut(s) 114
SfcI CTRYAG 2 cut(s) 279, 477
Sfr274I CTCGAG 1 cut(s) 520
SfuI TTCGAA 1 cut(s) 402
SlaI CTCGAG 1 cut(s) 520
SmiMI CAYNNNNRTG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 520
SmoI CTYRAG 1 cut(s) 520
Sse9I AATT 2 cut(s) 285, 482
SseBI AGGCCT 1 cut(s) 243
SsiI CCGC 1 cut(s) 127
SstI GAGCTC 1 cut(s) 529
StuI AGGCCT 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 2 cut(s) 108, 433
TaaI ACNGT 2 cut(s) 84, 181
TaqI TCGA 3 cut(s) 155, 402, 521
TasI AATT 2 cut(s) 285, 482
Tru1I TTAA 2 cut(s) 150, 486
Tru9I TTAA 2 cut(s) 150, 486
TscAI CASTG 2 cut(s) 202, 381
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 5 cut(s) 89, 205, 278, 281, 476
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 202, 381
XapI RAATTY 1 cut(s) 482
XhoI CTCGAG 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.