RchiOBHm_Chr3g0467671
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0024905
Physical Location & Seq
Forward (+)
13755455 .. 13755757
303 bp
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UTR
Exon/CDS
Intron
PRQ43362

Sequence Viewer

Length: 303 bp
ATGGATTTCTTCAACAAGTGTATGGAGCCCGTGGAGAAGTGTATAAGAGACGCTAACATGGACATAAGCCAGATTGATGATGTTGTTCTCGCCGGTGGATCTTCTAGAATTCCCAAAGTGCAGCAATTATTGCAAGATGTCTTCAAGGGAAAAAAGCTATGCAAAAGCATTAATCCAGATGAGGCAATAGCATTTGGTGCTGCTGTTCAAGCTGCAATCTTGAGTGGGAATGGAAATATATGGGAAGCTTCAAGACTTCAATCTCTTGGATGTCACACCTATGTCACTTGGAGTGCAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

100

Amino Acids

10.86

Weight (kDa)

5.69

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 2 - 78 3.5e-29 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024905)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0467671 RchiOBHm_Chr7g0201201
rosa_samantha Rh3AG137300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 287
AclWI GGATC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 108
AgsI TTSAA 5 cut(s) 13, 145, 209, 252, 260
AluBI AGCT 3 cut(s) 157, 212, 248
AluI AGCT 3 cut(s) 157, 212, 248
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 106
ApeKI GCWGC 3 cut(s) 121, 200, 212
ApoI RAATTY 1 cut(s) 108
AseI ATTAAT 1 cut(s) 171
BanII GRGCYC 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 133
BbvI GCAGC 3 cut(s) 133, 187, 199
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 105
BfuAI ACCTGC 1 cut(s) 287
BisI GCNGC 3 cut(s) 122, 201, 213
BlsI GCNGC 3 cut(s) 123, 202, 214
BmiI GGNNCC 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 133
BpuEI CTTGAG 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 30
BsaXI ACNNNNNCTCC 1 cut(s) 283
Bse118I RCCGGY 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 1 cut(s) 275
BseXI GCAGC 3 cut(s) 133, 187, 199
BsgI GTGCAG 1 cut(s) 140
BsiSI CCGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 42
BsmBI CGTCTC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 27
BspMI ACCTGC 1 cut(s) 287
BspPI GGATC 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 1 cut(s) 98
BstAPI GCANNNNNTGC 2 cut(s) 130, 197
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 275
BstKTI GATC 1 cut(s) 101
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 1 cut(s) 98
BstMWI GCNNNNNNNGC 3 cut(s) 130, 197, 209
BstV1I GCAGC 3 cut(s) 133, 187, 199
BstV2I GAAGAC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 1 cut(s) 275
BveI ACCTGC 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 92
CseI GACGC 1 cut(s) 59
CviAII CATG 1 cut(s) 58
CviJI RGCY 5 cut(s) 28, 69, 157, 212, 248
CviKI_1 RGCY 5 cut(s) 28, 69, 157, 212, 248
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 30
EcoRI GAATTC 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 1 cut(s) 61
FaiI YATR 8 cut(s) 23, 44, 59, 65, 160, 239, 241, 282
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 122, 201, 213
FokI GGATG 1 cut(s) 282
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 3 cut(s) 122, 201, 213
FspBI CTAG 1 cut(s) 105
GluI GCNGC 3 cut(s) 122, 201, 213
HapII CCGG 1 cut(s) 93
HgaI GACGC 1 cut(s) 59
Hin1II CATG 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 246
HpaII CCGG 1 cut(s) 93
Hpy188III TCNNGA 4 cut(s) 105, 176, 220, 252
HpyCH4V TGCA 5 cut(s) 121, 133, 162, 215, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 197, 209
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 1 cut(s) 98
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 4 cut(s) 83, 106, 189, 282
Lsp1109I GCAGC 3 cut(s) 133, 187, 199
MaeI CTAG 1 cut(s) 105
MaeIII GTNAC 2 cut(s) 272, 283
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MboII GAAGA 2 cut(s) 93, 133
MflI RGATCY 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 2 cut(s) 108, 125
MnlI CCTC 1 cut(s) 175
MseI TTAA 2 cut(s) 171, 301
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 130, 197, 209
NdeII GATC 1 cut(s) 98
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 27
NmuCI GTSAC 2 cut(s) 272, 283
PkrI GCNGC 3 cut(s) 123, 202, 214
PshBI ATTAAT 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 27
PsuI RGATCY 1 cut(s) 98
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 2 cut(s) 171, 301
SatI GCNGC 3 cut(s) 122, 201, 213
Sau3AI GATC 1 cut(s) 98
SduI GDGCHC 1 cut(s) 30
SetI ASST 5 cut(s) 159, 214, 250, 281, 301
SgrAI CRCCGGYG 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
Sse9I AATT 2 cut(s) 108, 125
SspMI CTAG 1 cut(s) 105
TasI AATT 2 cut(s) 108, 125
Tru1I TTAA 2 cut(s) 171, 301
Tru9I TTAA 2 cut(s) 171, 301
TseFI GTSAC 2 cut(s) 272, 283
TseI GCWGC 3 cut(s) 121, 200, 212
Tsp45I GTSAC 2 cut(s) 272, 283
VspI ATTAAT 1 cut(s) 171
XapI RAATTY 1 cut(s) 108
XbaI TCTAGA 1 cut(s) 104
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.