RchiOBHm_Chr7g0201201
HSP70 Family

Heat shock cognate 70 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0024905
Physical Location & Seq
Reverse (-)
18863472 .. 18863693
222 bp
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UTR
Exon/CDS
Intron
PRQ18012

Sequence Viewer

Length: 222 bp
ATGCTAAAATCGACAAGGGTTATTCATGATGTTGTACTTGTTGGTGGATCTACTAGAATTCCTAGGGTACATCAATTATTGAGGAACTTTTTTAATGGTAAGGAGCTTTGCAAGAGCACCAATCCTGATGAAGCAGTTGCATATGGTGCAGCCGTACAAGCTGCAATTTTGGGCAGCGAGGGAAATATTGAGAAGGTTAAGACTTACTCCAGTTGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

73

Amino Acids

8.0

Weight (kDa)

9.36

Isoelectric Point (pI)

23.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 7 - 64 5.1e-21 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024905)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0467671 RchiOBHm_Chr7g0201201
rosa_samantha Rh3AG137300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 57
AfaI GTAC 3 cut(s) 36, 69, 156
AluBI AGCT 2 cut(s) 106, 161
AluI AGCT 2 cut(s) 106, 161
Alw21I GWGCWC 1 cut(s) 119
AlwI GGATC 1 cut(s) 55
ApeKI GCWGC 3 cut(s) 149, 161, 174
ApoI RAATTY 1 cut(s) 57
AspA2I CCTAGG 1 cut(s) 62
AvrII CCTAGG 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 3 cut(s) 148, 161, 186
BceAI ACGGC 1 cut(s) 137
BfaI CTAG 2 cut(s) 54, 63
BisI GCNGC 3 cut(s) 150, 162, 175
BlnI CCTAGG 1 cut(s) 62
BlsI GCNGC 3 cut(s) 151, 163, 176
BpmI CTGGAG 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 210
BseXI GCAGC 3 cut(s) 148, 161, 186
BsgI GTGCAG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 47
BspHI TCATGA 1 cut(s) 25
BspPI GGATC 1 cut(s) 55
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 62
BstAPI GCANNNNNTGC 1 cut(s) 146
BstF5I GGATG 1 cut(s) 222
BstKTI GATC 1 cut(s) 50
BstMBI GATC 1 cut(s) 47
BstMWI GCNNNNNNNGC 2 cut(s) 146, 158
BstV1I GCAGC 3 cut(s) 148, 161, 186
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BtsCI GGATG 1 cut(s) 222
CciI TCATGA 1 cut(s) 25
Csp6I GTAC 3 cut(s) 35, 68, 155
CviAII CATG 1 cut(s) 26
CviJI RGCY 3 cut(s) 106, 152, 161
CviKI_1 RGCY 3 cut(s) 106, 152, 161
CviQI GTAC 3 cut(s) 35, 68, 155
DpnI GATC 1 cut(s) 49
DpnII GATC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 62
FaeI CATG 1 cut(s) 29
FaiI YATR 3 cut(s) 27, 142, 144
FatI CATG 1 cut(s) 25
FauNDI CATATG 1 cut(s) 142
Fnu4HI GCNGC 3 cut(s) 150, 162, 175
Fsp4HI GCNGC 3 cut(s) 150, 162, 175
FspBI CTAG 2 cut(s) 54, 63
GluI GCNGC 3 cut(s) 150, 162, 175
GsuI CTGGAG 1 cut(s) 193
Hin1II CATG 1 cut(s) 29
Hpy188III TCNNGA 2 cut(s) 26, 125
HpyAV CCTTC 1 cut(s) 187
HpyCH4V TGCA 4 cut(s) 111, 140, 149, 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 158
Hsp92II CATG 1 cut(s) 29
Kzo9I GATC 1 cut(s) 47
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 1 cut(s) 138
Lsp1109I GCAGC 3 cut(s) 148, 161, 186
MaeI CTAG 2 cut(s) 54, 63
MalI GATC 1 cut(s) 49
MboI GATC 1 cut(s) 47
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 3 cut(s) 57, 74, 165
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 2 cut(s) 75, 172
MseI TTAA 2 cut(s) 93, 198
MwoI GCNNNNNNNGC 2 cut(s) 146, 158
NdeI CATATG 1 cut(s) 142
NdeII GATC 1 cut(s) 47
NlaIII CATG 1 cut(s) 29
PagI TCATGA 1 cut(s) 25
PkrI GCNGC 3 cut(s) 151, 163, 176
PsuI RGATCY 1 cut(s) 47
RsaI GTAC 3 cut(s) 36, 69, 156
RsaNI GTAC 3 cut(s) 35, 68, 155
SaqAI TTAA 2 cut(s) 93, 198
SatI GCNGC 3 cut(s) 150, 162, 175
Sau3AI GATC 1 cut(s) 47
SduI GDGCHC 1 cut(s) 119
SetI ASST 3 cut(s) 108, 163, 198
SgeI CNNG 9 cut(s) 27, 38, 50, 66, 75, 124, 137, 170, 190
Sse9I AATT 3 cut(s) 57, 74, 165
SspI AATATT 1 cut(s) 187
SspMI CTAG 2 cut(s) 54, 63
StyI CCWWGG 1 cut(s) 62
TaqI TCGA 1 cut(s) 11
TasI AATT 3 cut(s) 57, 74, 165
TatI WGTACW 1 cut(s) 34
Tru1I TTAA 2 cut(s) 93, 198
Tru9I TTAA 2 cut(s) 93, 198
TseI GCWGC 3 cut(s) 149, 161, 174
TspDTI ATGAA 2 cut(s) 14, 144
XapI RAATTY 1 cut(s) 57
XmaJI CCTAGG 1 cut(s) 62
XspI CTAG 2 cut(s) 54, 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.