Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024919

Physical Location & Seq

Genomic Coordinates Forward (+)

15267027 .. 15267287

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43531

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGAAGTTCCCATTTCTTTGTGTGCAAGAAATGGCAAGACTCCGGCCACGAATGACAAGGACTGTTGAGATGTTGGCGGGTGAGATTGACATGAAAAATTATCAGATTTCACAACCTGGACTTGTTTCTGATTTCACAAACATCAAAATGGGTCAGCATCAGTCAGGTGATCATAGCACTTTCTCCAGGGTCTCCGCAGCTAGTACCACACAAACCCGCTTTTCATCTGAGGAGTTCGGGTTATCCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

83

Amino Acids

9.37

Weight (kDa)

7.96

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024919)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0469471
rosa_samantha	Rh3AG151000 Rh3CG165700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	77, 195, 217
AcoI	YGGCCR	1 cut(s)	44
AfaI	GTAC	1 cut(s)	205
AjnI	CCWGG	2 cut(s)	115, 185
AluBI	AGCT	1 cut(s)	200
AluI	AGCT	1 cut(s)	200
Alw26I	GTCTC	1 cut(s)	196
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	92, 179
BbvI	GCAGC	1 cut(s)	209
BciT130I	CCWGG	2 cut(s)	117, 187
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	2 cut(s)	117, 187
BmrFI	CCNGG	2 cut(s)	117, 187
BmsI	GCATC	1 cut(s)	166
BpmI	CTGGAG	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	117, 187
BseDI	CCNNGG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	219
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	209
BshFI	GGCC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	3 cut(s)	77, 195, 217
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	169
Bst2UI	CCWGG	2 cut(s)	117, 187
Bst4CI	ACNGT	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	228
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	169
BstNI	CCWGG	2 cut(s)	117, 187
BstSCI	CCNGG	2 cut(s)	115, 185
BstV1I	GCAGC	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	2 cut(s)	46, 200
CviKI_1	RGCY	2 cut(s)	46, 200
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	196
EcoRII	CCWGG	2 cut(s)	115, 185
FaeI	CATG	1 cut(s)	94
FaiI	YATR	2 cut(s)	92, 174
FatI	CATG	1 cut(s)	90
FauI	CCCGC	2 cut(s)	70, 224
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	169
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	1 cut(s)	43
Hin1II	CATG	1 cut(s)	94
HinfI	GANTC	1 cut(s)	39
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	2 cut(s)	92, 179
Hpy188I	TCNGA	3 cut(s)	105, 130, 229
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	25
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	169
LpnPI	CCDG	6 cut(s)	56, 102, 129, 150, 172, 199
Lsp1109I	GCAGC	1 cut(s)	209
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	201
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	33
MnlI	CCTC	1 cut(s)	223
MslI	CAYNNNNRTG	1 cut(s)	146
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	2 cut(s)	117, 187
MvaI	CCWGG	2 cut(s)	117, 187
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
Psp6I	CCWGG	2 cut(s)	115, 185
PspGI	CCWGG	2 cut(s)	115, 185
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	146
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	2 cut(s)	117, 187
SetI	ASST	3 cut(s)	118, 169, 202
SfaNI	GCATC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	3 cut(s)	77, 195, 217
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	115, 185
TaaI	ACNGT	1 cut(s)	64
TasI	AATT	1 cut(s)	97
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	3 cut(s)	17, 107, 213
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.