Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0024919

Physical Location & Seq

Genomic Coordinates Forward (+)

13488421 .. 13488747

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG151000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCAAGACTCCGGCCACGAATGACAAGGACTGTTGAGATGTTGGCGGGTGAGATTGACATGAAAAATTATCAGATTTCACAACCTGGACTTGTTTCTGATTTCACAAACATCAAAATGGGTCAGCATCAGTCAGGTGATCATAGCACTTTCTCCAGGGTCTCCGCAGCTAGTACCACACAAACCCGCTTTTCATCTGAGGAGTTCGGAAGCTGTCCCAGGAAAGGTTATTTCAGCCAACAGATCAGATTGTTCTTTTCGTTGGACATCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

91

Amino Acids

10.39

Weight (kDa)

9.51

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0024919)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0469471
rosa_samantha	Rh3AG151000 Rh3CG165700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	47, 165, 187
AcoI	YGGCCR	1 cut(s)	14
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	1 cut(s)	224
AjnI	CCWGG	3 cut(s)	85, 155, 218
AluBI	AGCT	2 cut(s)	170, 213
AluI	AGCT	2 cut(s)	170, 213
Alw26I	GTCTC	1 cut(s)	166
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	62, 149
BbvI	GCAGC	1 cut(s)	179
BciT130I	CCWGG	3 cut(s)	87, 157, 220
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	171
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	3 cut(s)	87, 157, 220
BmrFI	CCNGG	3 cut(s)	87, 157, 220
BmsI	GCATC	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	156, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
BseBI	CCWGG	3 cut(s)	87, 157, 220
BseDI	CCNNGG	2 cut(s)	156, 218
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	179
BshFI	GGCC	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	16
Bso31I	GGTCTC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	139, 243
BspACI	CCGC	3 cut(s)	47, 165, 187
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	156, 218
BssMI	GATC	2 cut(s)	139, 243
Bst2UI	CCWGG	3 cut(s)	87, 157, 220
Bst4CI	ACNGT	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	198
BstKTI	GATC	2 cut(s)	142, 246
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	2 cut(s)	139, 243
BstNI	CCWGG	3 cut(s)	87, 157, 220
BstSCI	CCNGG	3 cut(s)	85, 155, 218
BstV1I	GCAGC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	4 cut(s)	16, 170, 213, 237
CviKI_1	RGCY	4 cut(s)	16, 170, 213, 237
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	2 cut(s)	141, 245
DpnII	GATC	2 cut(s)	139, 243
EaeI	YGGCCR	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	166
EcoRII	CCWGG	3 cut(s)	85, 155, 218
FaeI	CATG	1 cut(s)	64
FaiI	YATR	2 cut(s)	62, 144
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	1 cut(s)	60
FauI	CCCGC	2 cut(s)	40, 194
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	16
HapII	CCGG	1 cut(s)	13
Hin1II	CATG	1 cut(s)	64
HinfI	GANTC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	2 cut(s)	62, 149
Hpy188I	TCNGA	5 cut(s)	75, 100, 199, 209, 248
HpyCH4III	ACNGT	1 cut(s)	34
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	64
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	139, 243
LpnPI	CCDG	8 cut(s)	26, 72, 99, 120, 142, 169, 205, 232
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	171
MalI	GATC	2 cut(s)	141, 245
MboI	GATC	2 cut(s)	139, 243
MluCI	AATT	1 cut(s)	67
MlyI	GAGTC	1 cut(s)	3
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	1 cut(s)	193
MslI	CAYNNNNRTG	1 cut(s)	116
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	3 cut(s)	87, 157, 220
MvaI	CCWGG	3 cut(s)	87, 157, 220
NdeII	GATC	2 cut(s)	139, 243
NlaIII	CATG	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	1 cut(s)	3
PpsI	GAGTC	1 cut(s)	3
Psp6I	CCWGG	3 cut(s)	85, 155, 218
PspGI	CCWGG	3 cut(s)	85, 155, 218
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
RseI	CAYNNNNRTG	1 cut(s)	116
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	2 cut(s)	139, 243
SchI	GAGTC	1 cut(s)	3
ScrFI	CCNGG	3 cut(s)	87, 157, 220
SetI	ASST	5 cut(s)	88, 139, 172, 215, 229
SfaNI	GCATC	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	116
Sse9I	AATT	1 cut(s)	67
SsiI	CCGC	3 cut(s)	47, 165, 187
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	3 cut(s)	85, 155, 218
TaaI	ACNGT	1 cut(s)	34
TasI	AATT	1 cut(s)	67
TseI	GCWGC	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	77, 183
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.