RchiOBHm_Chr3g0474901

receptor-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
20711265 .. 20711600
336 bp
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UTR
Exon/CDS
Intron
PRQ44044

Sequence Viewer

Length: 336 bp
ATGTCCTCAACTTACTGTAATGCTTTCATAGGGAAAATTCCATCATCATTTGGTAAGATGCGACAACTGGAGTTCTTAGATCTCTCAAAGAACCACTTGAGCAGCCAAATTCCCCCAGAGTTTGCAAGTCTCACTTTCCTTGCGTTCTTGGATCTCTCAAATAATGAACTAGTTGGGAAGATCCCAACCAACACTCAAATTTCAACATTTCTAAATACCTCCTTCAAAGGTAACAAAGGATTATGGGGGCCGCCATTGACAGTAGATGCAGTATTGCCACCACTAATTTCAAATGGAAGCTCAAGCCATCCGAATTCTGGAGATGAGATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.0

Weight (kDa)

5.53

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 14 - 57 8.7e-07 Leucine rich repeat
LRR_4 PF12799 22 - 62 6.1e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0029986)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0474901
rosa_rugosa Rorug03G0145300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 251
AclWI GGATC 2 cut(s) 159, 175
AcsI RAATTY 4 cut(s) 36, 108, 198, 313
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 3 cut(s) 204, 226, 291
AhlI ACTAGT 1 cut(s) 169
AluBI AGCT 1 cut(s) 300
AluI AGCT 1 cut(s) 300
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 2 cut(s) 159, 175
AoxI GGCC 1 cut(s) 248
ApeKI GCWGC 1 cut(s) 102
ApoI RAATTY 4 cut(s) 36, 108, 198, 313
AspS9I GGNCC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 114
BccI CCATC 2 cut(s) 49, 315
BcoDI GTCTC 1 cut(s) 134
BcuI ACTAGT 1 cut(s) 169
BfaI CTAG 1 cut(s) 170
BglII AGATCT 1 cut(s) 79
BisI GCNGC 2 cut(s) 103, 251
BlsI GCNGC 2 cut(s) 104, 252
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 249
BmsI GCATC 2 cut(s) 48, 256
BpmI CTGGAG 1 cut(s) 89
BpuEI CTTGAG 2 cut(s) 118, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 317
BseNI ACTGG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 114
BshFI GGCC 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 134
BsnI GGCC 1 cut(s) 250
Bsp143I GATC 3 cut(s) 79, 151, 180
BspACI CCGC 1 cut(s) 251
BspANI GGCC 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 2 cut(s) 159, 175
BsrI ACTGG 1 cut(s) 72
BssMI GATC 3 cut(s) 79, 151, 180
Bst4CI ACNGT 2 cut(s) 17, 262
BstDEI CTNAG 1 cut(s) 76
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 3 cut(s) 82, 154, 183
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 3 cut(s) 79, 151, 180
BstV1I GCAGC 1 cut(s) 114
BstX2I RGATCY 3 cut(s) 79, 151, 180
BstYI RGATCY 3 cut(s) 79, 151, 180
BsuRI GGCC 1 cut(s) 250
BtsCI GGATG 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 248
CviJI RGCY 4 cut(s) 105, 250, 300, 306
CviKI_1 RGCY 4 cut(s) 105, 250, 300, 306
DdeI CTNAG 1 cut(s) 76
DpnI GATC 3 cut(s) 81, 153, 182
DpnII GATC 3 cut(s) 79, 151, 180
EcoRI GAATTC 1 cut(s) 313
FaiI YATR 2 cut(s) 29, 244
FalI AAGNNNNNCTT 4 cut(s) 80, 112, 118, 150
Fnu4HI GCNGC 2 cut(s) 103, 251
FokI GGATG 1 cut(s) 294
Fsp4HI GCNGC 2 cut(s) 103, 251
FspBI CTAG 1 cut(s) 170
GluI GCNGC 2 cut(s) 103, 251
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 1 cut(s) 318
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 2 cut(s) 17, 262
HpyCH4V TGCA 2 cut(s) 125, 269
HpyF3I CTNAG 1 cut(s) 76
Kzo9I GATC 3 cut(s) 79, 151, 180
LpnPI CCDG 3 cut(s) 53, 129, 303
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 2 cut(s) 48, 256
MaeI CTAG 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 230
MalI GATC 3 cut(s) 81, 153, 182
MboI GATC 3 cut(s) 79, 151, 180
MboII GAAGA 1 cut(s) 190
MflI RGATCY 3 cut(s) 79, 151, 180
MluCI AATT 5 cut(s) 36, 108, 198, 285, 313
MnlI CCTC 2 cut(s) 16, 229
NdeII GATC 3 cut(s) 79, 151, 180
NlaIV GGNNCC 1 cut(s) 249
PkrI GCNGC 2 cut(s) 104, 252
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 248
PsuI RGATCY 3 cut(s) 79, 151, 180
SatI GCNGC 2 cut(s) 103, 251
Sau3AI GATC 3 cut(s) 79, 151, 180
Sau96I GGNCC 1 cut(s) 248
SetI ASST 3 cut(s) 221, 232, 302
SfaNI GCATC 2 cut(s) 48, 256
SgeI CNNG 9 cut(s) 80, 109, 128, 138, 152, 160, 182, 315, 330
SmlI CTYRAG 2 cut(s) 97, 301
SmoI CTYRAG 2 cut(s) 97, 301
SpeI ACTAGT 1 cut(s) 169
Sse9I AATT 5 cut(s) 36, 108, 198, 285, 313
SsiI CCGC 1 cut(s) 251
SspMI CTAG 1 cut(s) 170
TaaI ACNGT 2 cut(s) 17, 262
TasI AATT 5 cut(s) 36, 108, 198, 285, 313
TauI GCSGC 1 cut(s) 253
TseI GCWGC 1 cut(s) 102
TspDTI ATGAA 2 cut(s) 16, 180
XapI RAATTY 4 cut(s) 36, 108, 198, 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.