Rorug03G0145300

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0029986
Physical Location & Seq
Forward (+)
11917502 .. 11922347
4846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0145300.1

Sequence Viewer

Length: 1383 bp
ATGTATCTATGTCTTCCTCACTACGTCTCCATCAAATTTCCTGCATTTCACTCTCCAAAGATGGACTTCAAGCTTCGCGCCGTTTCAATGTCGGCAGAGGAAGTCGCTAATCACGTTCCGGCGGCTCCGATTTCGCTCCCTCAAGGGCCTTGGAAGCAGGTTCCCGGCGGAGTTACGGCGGCAGAGGGATTCAGAGCTGCTGGTTTATACGGCGGTTTGCGCGCCAAAGGAGATAAACCTGATCTTGCACTTGTCACTTGTGACGTTGATGCCATTTCTGCTGGATCATTTACTACAAATGTGGTAGCAGCTGCACCTGTGTTATACTGCAAAAGTATATTAAACACTTCGAAAACGGCACGGGCAGTTTTGATAAATGCTGGCCAAGCCAATGCAGCAACGGGTGATGCAGGTTATCAAGATGTAATAGAAAGTGCCAGCAGCCTTGCTAAGCTACTTCAAATAAGGCCAGAGGAAGTGCTGATTGAATCCACTGGCGTGATTGGGCAAAGAATAAAAAAGGAAGCACTTTTGAACTCTCTTCCAAACCTGGTGAAATCACTATCACCGGCAACTAAGGGAGCAGATGATGCAGCAGTGGCAATCACGACTACTGACCTTGTTAGCAAGAGTGTAGCAATTCAGTCTCAGGTTGGCGGGACGAACATAAGAGTTGGGGGAATGGCAAAAGGTTCCGGGATGATCCACCCAAATATGGCTACCATGCTTGGTGTAGTAACAACTGATGCCGTGGTTAGCAGTGATGTTTGGAGAAAAATGGTTCAAATTGCTGTAAATAGAAGCTTCAACCAGATAACAGTAGACGGAGATACCAGTACCAATGATACTGTCATTGCCTTAGCTAGTGGGTTGTCTGGATCAACCAAGATATCAACCTTTAACAGTAATGAGGCAGTACAACTTCAAGCATGTCTTGATGTGGTAATGCAAGGTCTTGCCAAATCAATAGCTTGGGATGGAGAAGGAGCAACATGCCTAATTGAGGTCACAGTGACTGGTGCAGGCAGTGAGGCTGAAGCAGCAAAGATAGCGCGGTCTGTGGCATCTTCTTCGCTTGTTAAGGCTGCTGTATATGGAAGAGATCCAAACTGGGGACGCATCGCCGCTGCTGCAGGCTATGCGGGTATTTCTTTTGATCAAACTAAGCTTCGAGTATTGCTAGGTGATACTCTGCTGATGGATGGTGGGGAACCACAATCCTTCGACAGGGATGCGGCTAGTGCCTACCTCAGGAAAGCTGGTGAGATCCATGGCACAGTTGTAATCAACGTAGCTGTCGGTGATGGACCAGGACATGGTCAAGCATGGGGCTGTGACTTAAGCTACGATTACGTCAAAATAAACGCCGAGTACACAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

460

Amino Acids

47.68

Weight (kDa)

5.92

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgJ PF01960 66 - 460 6e-138 ArgJ family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029986)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0474901
rosa_rugosa Rorug03G0145300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 148, 401
AccB7I CCANNNNNTGG 1 cut(s) 1316
AccI GTMKAC 1 cut(s) 822
AccII CGCG 3 cut(s) 78, 222, 1054
AciI CCGC 9 cut(s) 122, 168, 179, 213, 657, 1054, 1125, 1142, 1235
AclWI GGATC 5 cut(s) 292, 697, 886, 1097, 1261
AcoI YGGCCR 1 cut(s) 382
AcsI RAATTY 1 cut(s) 35
AcuI CTGAAG 1 cut(s) 1056
AfaI GTAC 3 cut(s) 838, 918, 1373
AfiI CCNNNNNNNGG 6 cut(s) 715, 1003, 1112, 1227, 1251, 1316
AflII CTTAAG 1 cut(s) 1339
AgsI TTSAA 8 cut(s) 70, 87, 461, 488, 535, 785, 808, 926
AjnI CCWGG 2 cut(s) 549, 1309
AleI CACNNNNGTG 1 cut(s) 497
Alw26I GTCTC 2 cut(s) 31, 651
AlwI GGATC 5 cut(s) 292, 697, 886, 1097, 1261
AlwNI CAGNNNCTG 1 cut(s) 1016
AoxI GGCC 3 cut(s) 146, 382, 467
ApoI RAATTY 1 cut(s) 35
AspLEI GCGC 4 cut(s) 80, 222, 224, 1054
AspS9I GGNCC 2 cut(s) 146, 1307
AsuC2I CCSGG 2 cut(s) 165, 697
AsuHPI GGTGA 6 cut(s) 416, 558, 565, 1196, 1274, 1313
AsuII TTCGAA 1 cut(s) 350
AvaII GGWCC 1 cut(s) 1307
AxyI CCTNAGG 1 cut(s) 1250
BalI TGGCCA 1 cut(s) 384
BbsI GAAGAC 1 cut(s) 5
BccI CCATC 6 cut(s) 38, 55, 971, 1192, 1196, 1298
BceAI ACGGC 5 cut(s) 65, 192, 226, 372, 734
BcgI CGANNNNNNTGC 4 cut(s) 1053, 1087, 1214, 1248
BciT130I CCWGG 2 cut(s) 551, 1311
BclI TGATCA 1 cut(s) 1156
BcnI CCSGG 2 cut(s) 165, 697
BcoDI GTCTC 2 cut(s) 31, 651
BfaI CTAG 3 cut(s) 864, 1181, 1239
BfmI CTRYAG 1 cut(s) 1131
BfrI CTTAAG 1 cut(s) 1339
BfuAI ACCTGC 2 cut(s) 148, 401
BlpI GCTNAGC 1 cut(s) 450
Bme1390I CCNGG 4 cut(s) 165, 551, 697, 1311
Bme18I GGWCC 1 cut(s) 1307
BmgT120I GGNCC 2 cut(s) 146, 1307
BmiI GGNNCC 4 cut(s) 126, 162, 694, 1212
BmrFI CCNGG 4 cut(s) 165, 551, 697, 1311
BmrI ACTGGG 1 cut(s) 1120
BmsI GCATC 7 cut(s) 259, 397, 580, 736, 1073, 1128, 1222
BmuI ACTGGG 1 cut(s) 1120
BpiI GAAGAC 1 cut(s) 5
Bpu10I CCTNAGC 1 cut(s) 859
Bpu1102I GCTNAGC 1 cut(s) 450
Bpu14I TTCGAA 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 126
BpuMI CCSGG 2 cut(s) 165, 697
BsaJI CCNNGG 3 cut(s) 149, 750, 1270
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 6 cut(s) 715, 1003, 1112, 1227, 1251, 1316
Bse118I RCCGGY 1 cut(s) 568
Bse1I ACTGG 4 cut(s) 499, 834, 1021, 1115
Bse21I CCTNAGG 1 cut(s) 1250
Bse3DI GCAATG 1 cut(s) 852
BseBI CCWGG 2 cut(s) 551, 1311
BseDI CCNNGG 3 cut(s) 149, 750, 1270
BseGI GGATG 4 cut(s) 705, 982, 1207, 1237
BseLI CCNNNNNNNGG 6 cut(s) 715, 1003, 1112, 1227, 1251, 1316
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 2 cut(s) 662, 1264
BseNI ACTGG 4 cut(s) 499, 834, 1021, 1115
BsePI GCGCGC 1 cut(s) 220
BsgI GTGCAG 2 cut(s) 297, 1041
Bsh1236I CGCG 3 cut(s) 78, 222, 1054
BshFI GGCC 3 cut(s) 148, 384, 469
BsiSI CCGG 4 cut(s) 119, 165, 569, 696
BslFI GGGAC 2 cut(s) 673, 1128
BslI CCNNNNNNNGG 6 cut(s) 715, 1003, 1112, 1227, 1251, 1316
BsmAI GTCTC 2 cut(s) 31, 651
BsmBI CGTCTC 1 cut(s) 31
BsmFI GGGAC 2 cut(s) 673, 1128
BsnI GGCC 3 cut(s) 148, 384, 469
Bsp119I TTCGAA 1 cut(s) 350
Bsp143I GATC 7 cut(s) 241, 284, 702, 878, 1102, 1156, 1266
Bsp1720I GCTNAGC 1 cut(s) 450
Bsp19I CCATGG 1 cut(s) 1270
BspACI CCGC 9 cut(s) 122, 168, 179, 213, 657, 1054, 1125, 1142, 1235
BspANI GGCC 3 cut(s) 148, 384, 469
BspCNI CTCAG 2 cut(s) 661, 1263
BspFNI CGCG 3 cut(s) 78, 222, 1054
BspLI GGNNCC 4 cut(s) 126, 162, 694, 1212
BspMAI CTGCAG 1 cut(s) 1135
BspMI ACCTGC 2 cut(s) 148, 401
BspPI GGATC 5 cut(s) 292, 697, 886, 1097, 1261
BspT104I TTCGAA 1 cut(s) 350
BspTI CTTAAG 1 cut(s) 1339
BsrDI GCAATG 1 cut(s) 852
BsrFI RCCGGY 1 cut(s) 568
BsrI ACTGG 4 cut(s) 499, 834, 1021, 1115
BssAI RCCGGY 1 cut(s) 568
BssECI CCNNGG 3 cut(s) 149, 750, 1270
BssHII GCGCGC 1 cut(s) 220
BssMI GATC 7 cut(s) 241, 284, 702, 878, 1102, 1156, 1266
BssT1I CCWWGG 2 cut(s) 149, 1270
Bst2UI CCWGG 2 cut(s) 551, 1311
Bst4CI ACNGT 5 cut(s) 820, 850, 905, 1012, 1279
Bst6I CTCTTC 2 cut(s) 546, 1093
BstAFI CTTAAG 1 cut(s) 1339
BstAPI GCANNNNNTGC 2 cut(s) 590, 1139
BstBI TTCGAA 1 cut(s) 350
BstC8I GCNNGC 5 cut(s) 222, 382, 439, 1024, 1135
BstDEI CTNAG 6 cut(s) 450, 576, 648, 859, 1164, 1250
BstDSI CCRYGG 2 cut(s) 750, 1270
BstENI CCTNNNNNAGG 3 cut(s) 1001, 1225, 1249
BstF5I GGATG 4 cut(s) 705, 982, 1207, 1237
BstFNI CGCG 3 cut(s) 78, 222, 1054
BstHHI GCGC 4 cut(s) 80, 222, 224, 1054
BstKTI GATC 7 cut(s) 244, 287, 705, 881, 1105, 1159, 1269
BstMAI GTCTC 2 cut(s) 31, 651
BstMBI GATC 7 cut(s) 241, 284, 702, 878, 1102, 1156, 1266
BstNI CCWGG 2 cut(s) 551, 1311
BstNSI RCATGY 2 cut(s) 933, 996
BstSCI CCNGG 4 cut(s) 163, 549, 695, 1309
BstSFI CTRYAG 1 cut(s) 1131
BstUI CGCG 3 cut(s) 78, 222, 1054
BstV2I GAAGAC 1 cut(s) 5
BstX2I RGATCY 2 cut(s) 1102, 1266
BstYI RGATCY 2 cut(s) 1102, 1266
Bsu36I CCTNAGG 1 cut(s) 1250
BsuRI GGCC 3 cut(s) 148, 384, 469
BtgI CCRYGG 2 cut(s) 750, 1270
BtgZI GCGATG 1 cut(s) 1105
BtsCI GGATG 4 cut(s) 705, 982, 1207, 1237
BtsI GCAGTG 3 cut(s) 603, 766, 1033
BtsIMutI CAGTG 5 cut(s) 492, 603, 766, 1017, 1033
BveI ACCTGC 2 cut(s) 148, 401
Cac8I GCNNGC 5 cut(s) 222, 382, 439, 1024, 1135
CaiI CAGNNNCTG 1 cut(s) 1016
CfoI GCGC 4 cut(s) 80, 222, 224, 1054
Cfr10I RCCGGY 1 cut(s) 568
Cfr13I GGNCC 2 cut(s) 146, 1307
CseI GACGC 1 cut(s) 1125
CsiI ACCWGGT 1 cut(s) 549
Csp6I GTAC 3 cut(s) 837, 917, 1372
CviAII CATG 6 cut(s) 724, 930, 993, 1271, 1316, 1326
CviQI GTAC 3 cut(s) 837, 917, 1372
DdeI CTNAG 6 cut(s) 450, 576, 648, 859, 1164, 1250
DpnI GATC 7 cut(s) 243, 286, 704, 880, 1104, 1158, 1268
DpnII GATC 7 cut(s) 241, 284, 702, 878, 1102, 1156, 1266
EaeI YGGCCR 1 cut(s) 382
Eam1104I CTCTTC 2 cut(s) 546, 1093
EarI CTCTTC 2 cut(s) 546, 1093
EciI GGCGGA 1 cut(s) 183
Eco130I CCWWGG 2 cut(s) 149, 1270
Eco32I GATATC 1 cut(s) 891
Eco47I GGWCC 1 cut(s) 1307
Eco57I CTGAAG 1 cut(s) 1056
Eco81I CCTNAGG 1 cut(s) 1250
EcoNI CCTNNNNNAGG 3 cut(s) 1001, 1225, 1249
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 549, 1309
EcoRV GATATC 1 cut(s) 891
EcoT14I CCWWGG 2 cut(s) 149, 1270
ErhI CCWWGG 2 cut(s) 149, 1270
Esp3I CGTCTC 1 cut(s) 31
FaeI CATG 6 cut(s) 727, 933, 996, 1274, 1319, 1329
FalI AAGNNNNNCTT 4 cut(s) 50, 82, 918, 950
FaqI GGGAC 2 cut(s) 673, 1128
FatI CATG 6 cut(s) 723, 929, 992, 1270, 1315, 1325
FauI CCCGC 2 cut(s) 650, 1135
FbaI TGATCA 1 cut(s) 1156
FblI GTMKAC 1 cut(s) 822
FokI GGATG 4 cut(s) 712, 989, 1214, 1244
FspBI CTAG 3 cut(s) 864, 1181, 1239
GlaI GCGC 4 cut(s) 79, 221, 223, 1053
HaeIII GGCC 3 cut(s) 148, 384, 469
HapII CCGG 4 cut(s) 119, 165, 569, 696
HgaI GACGC 1 cut(s) 1125
HhaI GCGC 4 cut(s) 80, 222, 224, 1054
Hin1II CATG 6 cut(s) 727, 933, 996, 1274, 1319, 1329
Hin6I GCGC 4 cut(s) 78, 220, 222, 1052
HinP1I GCGC 4 cut(s) 78, 220, 222, 1052
HindIII AAGCTT 3 cut(s) 71, 802, 1166
HinfI GANTC 2 cut(s) 189, 488
HpaII CCGG 4 cut(s) 119, 165, 569, 696
HphI GGTGA 6 cut(s) 416, 558, 565, 1196, 1274, 1313
Hpy166II GTNNAC 2 cut(s) 823, 1374
Hpy188I TCNGA 2 cut(s) 129, 194
Hpy188III TCNNGA 5 cut(s) 419, 607, 876, 935, 1252
Hpy8I GTNNAC 2 cut(s) 823, 1374
HpyAV CCTTC 2 cut(s) 977, 1231
HpyCH4III ACNGT 5 cut(s) 820, 850, 905, 1012, 1279
HpyCH4IV ACGT 5 cut(s) 24, 114, 264, 1290, 1353
HpyF3I CTNAG 6 cut(s) 450, 576, 648, 859, 1164, 1250
HpySE526I ACGT 5 cut(s) 24, 114, 264, 1290, 1353
Hsp92II CATG 6 cut(s) 727, 933, 996, 1274, 1319, 1329
HspAI GCGC 4 cut(s) 78, 220, 222, 1052
Ksp22I TGATCA 1 cut(s) 1156
Kzo9I GATC 7 cut(s) 241, 284, 702, 878, 1102, 1156, 1266
LmnI GCTCC 4 cut(s) 130, 141, 581, 986
LweI GCATC 7 cut(s) 259, 397, 580, 736, 1073, 1128, 1222
MabI ACCWGGT 1 cut(s) 549
MaeI CTAG 3 cut(s) 864, 1181, 1239
MaeII ACGT 5 cut(s) 24, 114, 264, 1290, 1353
MaeIII GTNAC 7 cut(s) 172, 253, 260, 736, 1006, 1012, 1334
MalI GATC 7 cut(s) 243, 286, 704, 880, 1104, 1158, 1268
MboI GATC 7 cut(s) 241, 284, 702, 878, 1102, 1156, 1266
MboII GAAGA 5 cut(s) 5, 533, 1059, 1062, 1110
MflI RGATCY 2 cut(s) 1102, 1266
MlsI TGGCCA 1 cut(s) 384
MluCI AATT 4 cut(s) 35, 639, 786, 999
MluNI TGGCCA 1 cut(s) 384
MnlI CCTC 9 cut(s) 27, 91, 150, 178, 466, 904, 997, 1024, 1259
Mox20I TGGCCA 1 cut(s) 384
MscI TGGCCA 1 cut(s) 384
MseI TTAA 4 cut(s) 341, 900, 1080, 1340
MslI CAYNNNNRTG 1 cut(s) 497
Msp20I TGGCCA 1 cut(s) 384
MspA1I CMGCKG 2 cut(s) 311, 1127
MspCI CTTAAG 1 cut(s) 1339
MspI CCGG 4 cut(s) 119, 165, 569, 696
MspR9I CCNGG 4 cut(s) 165, 551, 697, 1311
MvaI CCWGG 2 cut(s) 551, 1311
MvnI CGCG 3 cut(s) 78, 222, 1054
NciI CCSGG 2 cut(s) 165, 697
NcoI CCATGG 1 cut(s) 1270
NdeII GATC 7 cut(s) 241, 284, 702, 878, 1102, 1156, 1266
NlaIII CATG 6 cut(s) 727, 933, 996, 1274, 1319, 1329
NlaIV GGNNCC 4 cut(s) 126, 162, 694, 1212
NmuCI GTSAC 5 cut(s) 253, 260, 1006, 1012, 1334
NspI RCATGY 2 cut(s) 933, 996
NspV TTCGAA 1 cut(s) 350
OliI CACNNNNGTG 1 cut(s) 497
PauI GCGCGC 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 2 cut(s) 189, 488
PflFI GACNNNGTC 1 cut(s) 1317
PflMI CCANNNNNTGG 1 cut(s) 1316
PfoI TCCNGGA 1 cut(s) 695
Psp6I CCWGG 2 cut(s) 549, 1309
PspGI CCWGG 2 cut(s) 549, 1309
PspN4I GGNNCC 4 cut(s) 126, 162, 694, 1212
PspPI GGNCC 2 cut(s) 146, 1307
PstI CTGCAG 1 cut(s) 1135
PstNI CAGNNNCTG 1 cut(s) 1016
PsuI RGATCY 2 cut(s) 1102, 1266
PsyI GACNNNGTC 1 cut(s) 1317
PteI GCGCGC 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 3 cut(s) 838, 918, 1373
RsaNI GTAC 3 cut(s) 837, 917, 1372
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 4 cut(s) 341, 900, 1080, 1340
Sau3AI GATC 7 cut(s) 241, 284, 702, 878, 1102, 1156, 1266
Sau96I GGNCC 2 cut(s) 146, 1307
ScrFI CCNGG 4 cut(s) 165, 551, 697, 1311
SexAI ACCWGGT 1 cut(s) 549
SfaNI GCATC 7 cut(s) 259, 397, 580, 736, 1073, 1128, 1222
SfcI CTRYAG 1 cut(s) 1131
SfuI TTCGAA 1 cut(s) 350
SinI GGWCC 1 cut(s) 1307
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 2 cut(s) 141, 1339
SmoI CTYRAG 2 cut(s) 141, 1339
Sse9I AATT 4 cut(s) 35, 639, 786, 999
SsiI CCGC 9 cut(s) 122, 168, 179, 213, 657, 1054, 1125, 1142, 1235
SspMI CTAG 3 cut(s) 864, 1181, 1239
StyD4I CCNGG 4 cut(s) 163, 549, 695, 1309
StyI CCWWGG 2 cut(s) 149, 1270
TaaI ACNGT 5 cut(s) 820, 850, 905, 1012, 1279
TaiI ACGT 5 cut(s) 27, 117, 267, 1293, 1356
TaqI TCGA 3 cut(s) 350, 1171, 1224
TasI AATT 4 cut(s) 35, 639, 786, 999
TatI WGTACW 2 cut(s) 916, 1371
TauI GCSGC 4 cut(s) 125, 182, 1127, 1238
TfiI GAWTC 2 cut(s) 189, 488
Tru1I TTAA 4 cut(s) 341, 900, 1080, 1340
Tru9I TTAA 4 cut(s) 341, 900, 1080, 1340
TscAI CASTG 5 cut(s) 499, 603, 766, 1017, 1033
TseFI GTSAC 5 cut(s) 253, 260, 1006, 1012, 1334
Tsp45I GTSAC 5 cut(s) 253, 260, 1006, 1012, 1334
TspGWI ACGGA 1 cut(s) 840
TspRI CASTG 5 cut(s) 499, 603, 766, 1017, 1033
Tth111I GACNNNGTC 1 cut(s) 1317
Van91I CCANNNNNTGG 1 cut(s) 1316
Vha464I CTTAAG 1 cut(s) 1339
VpaK11BI GGWCC 1 cut(s) 1307
XagI CCTNNNNNAGG 3 cut(s) 1001, 1225, 1249
XapI RAATTY 1 cut(s) 35
XceI RCATGY 2 cut(s) 933, 996
XmiI GTMKAC 1 cut(s) 822
XspI CTAG 3 cut(s) 864, 1181, 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.