Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029968

Physical Location & Seq

Genomic Coordinates Forward (+)

22407217 .. 22408435

Gene Structure 1219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44186

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTCGCGAGAAACCCTAGCTTCTTCTTCGTCTTCTATAGCCCCGAGAAACCCTAGCTTCTCCTTCACCTCCACGCCGAGGCGCTTCAATGGAGTCGGCAACCGCGTCTCCTTCGCCGCAACCTCTAATCGCACTTCGCTCCGGTGCTACGCTTCTACCTCCGGTGGCTTCGAGAAAGTCCGGGTTAAGAATCGGATCGTCGAAATGGACGGTGATGAAATGACGAGGATCATCTGGACAGAATCAAAGAAAAACTTATTTTCCCCTTATTTTCCCCTATGTGGATTTGGACATAAAGTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

101

Amino Acids

11.26

Weight (kDa)

10.36

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476441
rosa_samantha	Rh3CG227700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	7, 105
AciI	CCGC	2 cut(s)	103, 117
AclWI	GGATC	2 cut(s)	203, 236
AfiI	CCNNNNNNNGG	2 cut(s)	78, 281
AgsI	TTSAA	1 cut(s)	88
AluBI	AGCT	2 cut(s)	20, 57
AluI	AGCT	2 cut(s)	20, 57
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	203, 236
Ama87I	CYCGRG	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	84
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	58, 224
AvaI	CYCGRG	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	2 cut(s)	17, 54
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	85
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	77
BsaWI	WCCGGW	2 cut(s)	141, 161
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 281
BseDI	CCNNGG	1 cut(s)	77
BseLI	CCNNNNNNNGG	2 cut(s)	78, 281
Bsh1236I	CGCG	2 cut(s)	7, 105
BsiHKCI	CYCGRG	1 cut(s)	43
BsiSI	CCGG	3 cut(s)	142, 162, 181
BslI	CCNNNNNNNGG	2 cut(s)	78, 281
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
BsoBI	CYCGRG	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	195, 228
Bsp68I	TCGCGA	1 cut(s)	7
BspACI	CCGC	2 cut(s)	103, 117
BspFNI	CGCG	2 cut(s)	7, 105
BspPI	GGATC	2 cut(s)	203, 236
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	2 cut(s)	195, 228
Bst4CI	ACNGT	1 cut(s)	212
BstFNI	CGCG	2 cut(s)	7, 105
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	2 cut(s)	198, 231
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	2 cut(s)	195, 228
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	36
BstUI	CGCG	2 cut(s)	7, 105
BstV2I	GAAGAC	1 cut(s)	24
BtuMI	TCGCGA	1 cut(s)	7
CfoI	GCGC	1 cut(s)	84
CseI	GACGC	1 cut(s)	94
CviJI	RGCY	4 cut(s)	20, 41, 57, 168
CviKI_1	RGCY	4 cut(s)	20, 41, 57, 168
DpnI	GATC	2 cut(s)	197, 230
DpnII	GATC	2 cut(s)	195, 228
Eco88I	CYCGRG	1 cut(s)	43
Esp3I	CGTCTC	1 cut(s)	112
FaiI	YATR	4 cut(s)	38, 280, 294, 304
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
Fnu4HI	GCNGC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	17, 54
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	85
HapII	CCGG	3 cut(s)	142, 162, 181
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	1 cut(s)	84
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	3 cut(s)	93, 190, 242
HpaII	CCGG	3 cut(s)	142, 162, 181
HphI	GGTGA	2 cut(s)	58, 224
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	3 cut(s)	6, 172, 235
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	73, 121
HpyCH4III	ACNGT	1 cut(s)	212
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	195, 228
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	4 cut(s)	155, 175, 194, 220
MaeI	CTAG	2 cut(s)	17, 54
MalI	GATC	2 cut(s)	197, 230
MboI	GATC	2 cut(s)	195, 228
MboII	GAAGA	3 cut(s)	15, 18, 24
MlyI	GAGTC	1 cut(s)	102
MnlI	CCTC	5 cut(s)	72, 79, 133, 169, 219
MseI	TTAA	1 cut(s)	186
MspI	CCGG	3 cut(s)	142, 162, 181
MspR9I	CCNGG	1 cut(s)	182
MvnI	CGCG	2 cut(s)	7, 105
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	2 cut(s)	195, 228
NmeAIII	GCCGAG	1 cut(s)	102
NruI	TCGCGA	1 cut(s)	7
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	190, 242
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
RruI	TCGCGA	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	2 cut(s)	195, 228
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	182
SetI	ASST	5 cut(s)	22, 59, 71, 125, 161
SfcI	CTRYAG	1 cut(s)	36
SsiI	CCGC	2 cut(s)	103, 117
SspMI	CTAG	2 cut(s)	17, 54
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	2 cut(s)	171, 201
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	2 cut(s)	190, 242
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TspDTI	ATGAA	1 cut(s)	231
XspI	CTAG	2 cut(s)	17, 54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.