Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0029968

Physical Location & Seq

Genomic Coordinates Reverse (-)

21407910 .. 21409502

Gene Structure 1593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG227700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCTAAAGGCGAGACTCCAATTGAGCGCCATGTCGCGAGAAACCCTAGCTTCTTCTTCGTCTTCTATAGCCCCGAGAAACCCTAGCTTCTCCTTCACCTCCAGGCCGAGGCGCTTCAATGGAGTCGGCAACCGCGTCTCCTTCGCCGCAACCTCTAATCGCACTTCGCTCCGGTGCTACGCTTCTACCTCCGGTGGCTTCGAGAAAGTCCGGGTTAAGAATCGGATCGTCGAAATGGACGGTGATGAAATGACGAGGATCATCTGGACAGAATCAAAGAAAAACTTATTTTCCCCTATTGCTGAAGCCACTCTTAAGTGCAATCTTGCTGTGAAATGTGCTATAATAACTCCTGGTACTGTCTTTCGAGAAACTATCCTATGCCAAAACATTCCTAGATTAGTTCCGGGCTGGAAGAAACCCATCTGTATTGGTAGGTATGCTTTCGGCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

151

Amino Acids

16.75

Weight (kDa)

10.39

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029968)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476441
rosa_samantha	Rh3CG227700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	37, 135
AciI	CCGC	2 cut(s)	133, 147
AclWI	GGATC	2 cut(s)	233, 266
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	118
AjnI	CCWGG	2 cut(s)	101, 352
AluBI	AGCT	2 cut(s)	50, 87
AluI	AGCT	2 cut(s)	50, 87
Alw26I	GTCTC	2 cut(s)	7, 142
AlwI	GGATC	2 cut(s)	233, 266
Ama87I	CYCGRG	1 cut(s)	73
AoxI	GGCC	1 cut(s)	104
AspLEI	GCGC	2 cut(s)	29, 114
AsuC2I	CCSGG	2 cut(s)	212, 408
AsuHPI	GGTGA	2 cut(s)	88, 254
AvaI	CYCGRG	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	54
BccI	CCATC	1 cut(s)	431
BciT130I	CCWGG	2 cut(s)	103, 354
BcnI	CCSGG	2 cut(s)	212, 408
BcoDI	GTCTC	2 cut(s)	7, 142
BfaI	CTAG	3 cut(s)	47, 84, 396
BfmI	CTRYAG	1 cut(s)	66
BfoI	RGCGCY	2 cut(s)	30, 115
BfrI	CTTAAG	1 cut(s)	314
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	4 cut(s)	103, 212, 354, 408
BmeT110I	CYCGRG	1 cut(s)	73
BmrFI	CCNGG	4 cut(s)	103, 212, 354, 408
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	85
BpuMI	CCSGG	2 cut(s)	212, 408
BsaJI	CCNNGG	1 cut(s)	107
BsaWI	WCCGGW	2 cut(s)	171, 191
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	103, 354
BseDI	CCNNGG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	108
Bsh1236I	CGCG	2 cut(s)	37, 135
BshFI	GGCC	1 cut(s)	106
BsiHKCI	CYCGRG	1 cut(s)	73
BsiSI	CCGG	4 cut(s)	172, 192, 211, 407
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	7, 142
BsmBI	CGTCTC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	106
BsoBI	CYCGRG	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	225, 258
Bsp68I	TCGCGA	1 cut(s)	37
BspACI	CCGC	2 cut(s)	133, 147
BspANI	GGCC	1 cut(s)	106
BspFNI	CGCG	2 cut(s)	37, 135
BspPI	GGATC	2 cut(s)	233, 266
BspTI	CTTAAG	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	2 cut(s)	225, 258
Bst2UI	CCWGG	2 cut(s)	103, 354
Bst4CI	ACNGT	2 cut(s)	242, 361
BstAFI	CTTAAG	1 cut(s)	314
BstFNI	CGCG	2 cut(s)	37, 135
BstH2I	RGCGCY	2 cut(s)	30, 115
BstHHI	GCGC	2 cut(s)	29, 114
BstKTI	GATC	2 cut(s)	228, 261
BstMAI	GTCTC	2 cut(s)	7, 142
BstMBI	GATC	2 cut(s)	225, 258
BstNI	CCWGG	2 cut(s)	103, 354
BstSCI	CCNGG	4 cut(s)	101, 210, 352, 406
BstSFI	CTRYAG	1 cut(s)	66
BstUI	CGCG	2 cut(s)	37, 135
BstV2I	GAAGAC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	106
BtuMI	TCGCGA	1 cut(s)	37
CfoI	GCGC	2 cut(s)	29, 114
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	7 cut(s)	50, 71, 87, 106, 198, 308, 411
CviKI_1	RGCY	7 cut(s)	50, 71, 87, 106, 198, 308, 411
CviQI	GTAC	1 cut(s)	357
DpnI	GATC	2 cut(s)	227, 260
DpnII	GATC	2 cut(s)	225, 258
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	73
EcoRII	CCWGG	2 cut(s)	101, 352
Esp3I	CGTCTC	1 cut(s)	142
FaeI	CATG	1 cut(s)	34
FaiI	YATR	5 cut(s)	32, 68, 344, 382, 441
FalI	AAGNNNNNCTT	4 cut(s)	269, 301, 297, 329
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	3 cut(s)	47, 84, 396
GlaI	GCGC	2 cut(s)	28, 113
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	85
HaeII	RGCGCY	2 cut(s)	30, 115
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	4 cut(s)	172, 192, 211, 407
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	2 cut(s)	29, 114
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	2 cut(s)	27, 112
HinP1I	GCGC	2 cut(s)	27, 112
HinfI	GANTC	4 cut(s)	15, 123, 220, 272
HpaII	CCGG	4 cut(s)	172, 192, 211, 407
HphI	GGTGA	2 cut(s)	88, 254
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	4 cut(s)	36, 202, 265, 368
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	103, 151
HpyCH4III	ACNGT	2 cut(s)	242, 361
HpyCH4V	TGCA	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	2 cut(s)	27, 112
Kzo9I	GATC	2 cut(s)	225, 258
LmnI	GCTCC	1 cut(s)	174
MaeI	CTAG	3 cut(s)	47, 84, 396
MalI	GATC	2 cut(s)	227, 260
MboI	GATC	2 cut(s)	225, 258
MboII	GAAGA	4 cut(s)	45, 48, 54, 427
MfeI	CAATTG	1 cut(s)	20
MluCI	AATT	1 cut(s)	20
MlyI	GAGTC	2 cut(s)	9, 132
MnlI	CCTC	5 cut(s)	102, 109, 163, 199, 249
MseI	TTAA	2 cut(s)	216, 315
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	4 cut(s)	172, 192, 211, 407
MspR9I	CCNGG	4 cut(s)	103, 212, 354, 408
MunI	CAATTG	1 cut(s)	20
MvaI	CCWGG	2 cut(s)	103, 354
MvnI	CGCG	2 cut(s)	37, 135
NciI	CCSGG	2 cut(s)	212, 408
NdeII	GATC	2 cut(s)	225, 258
NlaIII	CATG	1 cut(s)	34
NmeAIII	GCCGAG	1 cut(s)	132
NruI	TCGCGA	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	220, 272
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	2 cut(s)	9, 131
PpsI	GAGTC	2 cut(s)	9, 131
Psp6I	CCWGG	2 cut(s)	101, 352
PspGI	CCWGG	2 cut(s)	101, 352
RruI	TCGCGA	1 cut(s)	37
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	216, 315
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	225, 258
SchI	GAGTC	2 cut(s)	9, 132
ScrFI	CCNGG	4 cut(s)	103, 212, 354, 408
SetI	ASST	6 cut(s)	52, 89, 101, 155, 191, 440
SfcI	CTRYAG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	1 cut(s)	20
SsiI	CCGC	2 cut(s)	133, 147
SspMI	CTAG	3 cut(s)	47, 84, 396
StyD4I	CCNGG	4 cut(s)	101, 210, 352, 406
TaaI	ACNGT	2 cut(s)	242, 361
TaqI	TCGA	3 cut(s)	201, 231, 367
TasI	AATT	1 cut(s)	20
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	220, 272
Tru1I	TTAA	2 cut(s)	216, 315
Tru9I	TTAA	2 cut(s)	216, 315
TspDTI	ATGAA	1 cut(s)	261
Vha464I	CTTAAG	1 cut(s)	314
XspI	CTAG	3 cut(s)	47, 84, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.