Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029929

Physical Location & Seq

Genomic Coordinates Forward (+)

26108776 .. 26109053

Gene Structure 278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44536

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGTGCGCTGATATGCTTTGGAGAAAGGAGTTCGGTTCCAACACTATTGTGGAGGATTTTGAGTTCAGAGAATTGGATAAAGTTCTTAACTATTACCCTCATGGGCATCATGGTGTGGGTAAGGAGGGAAGACCAATATATTTTTTTTTTGAAAGGGAAGACCAGTTTATATTAAAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0071944 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

60

Amino Acids

7.24

Weight (kDa)

5.48

Isoelectric Point (pI)

12.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029929)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0480341 RchiOBHm_Chr6g0277341

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	152
AleI	CACNNNNGTG	1 cut(s)	47
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AspLEI	GCGC	1 cut(s)	8
BbsI	GAAGAC	2 cut(s)	136, 165
BmiI	GGNNCC	1 cut(s)	37
BmsI	GCATC	1 cut(s)	115
BpiI	GAAGAC	2 cut(s)	136, 165
Bse1I	ACTGG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	8
BstV2I	GAAGAC	2 cut(s)	136, 165
CfoI	GCGC	1 cut(s)	8
CviAII	CATG	2 cut(s)	101, 110
FaeI	CATG	2 cut(s)	104, 113
FaiI	YATR	5 cut(s)	14, 102, 111, 139, 170
FatI	CATG	2 cut(s)	100, 109
GlaI	GCGC	1 cut(s)	7
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	104, 113
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	104, 113
HspAI	GCGC	1 cut(s)	6
LpnPI	CCDG	1 cut(s)	176
LweI	GCATC	1 cut(s)	115
MboII	GAAGA	2 cut(s)	141, 170
MluCI	AATT	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	3 cut(s)	46, 108, 118
MseI	TTAA	2 cut(s)	87, 173
MslI	CAYNNNNRTG	2 cut(s)	47, 111
NlaIII	CATG	2 cut(s)	104, 113
NlaIV	GGNNCC	1 cut(s)	37
OliI	CACNNNNGTG	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	37
RseI	CAYNNNNRTG	2 cut(s)	47, 111
SaqAI	TTAA	2 cut(s)	87, 173
SetI	ASST	1 cut(s)	181
SfaNI	GCATC	1 cut(s)	115
SgeI	CNNG	3 cut(s)	113, 122, 175
SmiMI	CAYNNNNRTG	2 cut(s)	47, 111
Sse9I	AATT	1 cut(s)	71
TasI	AATT	1 cut(s)	71
Tru1I	TTAA	2 cut(s)	87, 173
Tru9I	TTAA	2 cut(s)	87, 173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.