RchiOBHm_Chr6g0277341

Phosphatidylinositol phosphatidylcholine transfer protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
39809722 .. 39810118
397 bp
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UTR
Exon/CDS
Intron
PRQ24880

Sequence Viewer

Length: 303 bp
ATGTGCGCTGATATGCTTTGGAGAAAGGAGTTCGGTTCCAACATTATTATGGAGGATTTTGAGTTCAGAAAATTGGATAAAGTTCTTAACTATTACCCTCATGCGCATCATGGTGTGGGTACGGAGGGAAGACCAGTTTATATTGAAAGGTTAGGGAAAGTACATCCCAAAAAACTAATGCAAGTCAACACTAATGGTCTATATGTGAAATACCATGTACATGATTTTGAGAAAAGCTTTGTAATAAAGTTTCTGACTTGTACTATTGCAAGCTGCAAAGAGGCACATAGATTCAAGCACTAA

Protein Analysis

100

Amino Acids

11.86

Weight (kDa)

9.2

Isoelectric Point (pI)

18.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029929)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0480341 RchiOBHm_Chr6g0277341

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 105
AfaI GTAC 4 cut(s) 121, 162, 219, 262
AgsI TTSAA 2 cut(s) 146, 295
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AluBI AGCT 2 cut(s) 237, 273
AluI AGCT 2 cut(s) 237, 273
ApeKI GCWGC 1 cut(s) 273
AspLEI GCGC 2 cut(s) 8, 106
BbsI GAAGAC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 260
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 37
BmsI GCATC 1 cut(s) 115
BpiI GAAGAC 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 260
Bsp1407I TGTACA 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 37
BsrGI TGTACA 1 cut(s) 217
BsrI ACTGG 1 cut(s) 134
BstAUI TGTACA 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 271
BstF5I GGATG 1 cut(s) 163
BstHHI GCGC 2 cut(s) 8, 106
BstV1I GCAGC 1 cut(s) 260
BstV2I GAAGAC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 271
CfoI GCGC 2 cut(s) 8, 106
Csp6I GTAC 4 cut(s) 120, 161, 218, 261
CviAII CATG 4 cut(s) 101, 110, 215, 221
CviJI RGCY 2 cut(s) 237, 273
CviKI_1 RGCY 2 cut(s) 237, 273
CviQI GTAC 4 cut(s) 120, 161, 218, 261
FaeI CATG 4 cut(s) 104, 113, 218, 224
FatI CATG 4 cut(s) 100, 109, 214, 220
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 274
FspAI RTGCGCAY 1 cut(s) 105
FspI TGCGCA 1 cut(s) 105
GlaI GCGC 2 cut(s) 7, 105
GluI GCNGC 1 cut(s) 274
HhaI GCGC 2 cut(s) 8, 106
Hin1II CATG 4 cut(s) 104, 113, 218, 224
Hin6I GCGC 2 cut(s) 6, 104
HinP1I GCGC 2 cut(s) 6, 104
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 235
HinfI GANTC 1 cut(s) 291
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 68, 255
Hpy8I GTNNAC 1 cut(s) 187
HpyCH4V TGCA 3 cut(s) 181, 269, 276
Hsp92II CATG 4 cut(s) 104, 113, 218, 224
HspAI GCGC 2 cut(s) 6, 104
LpnPI CCDG 1 cut(s) 147
Lsp1109I GCAGC 1 cut(s) 260
LweI GCATC 1 cut(s) 115
MboII GAAGA 1 cut(s) 141
MluCI AATT 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 4 cut(s) 46, 108, 118, 274
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 3 cut(s) 47, 111, 219
NlaIII CATG 4 cut(s) 104, 113, 218, 224
NlaIV GGNNCC 1 cut(s) 37
NsbI TGCGCA 1 cut(s) 105
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 37
RsaI GTAC 4 cut(s) 121, 162, 219, 262
RsaNI GTAC 4 cut(s) 120, 161, 218, 261
RseI CAYNNNNRTG 3 cut(s) 47, 111, 219
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 274
SetI ASST 3 cut(s) 152, 239, 275
SfaNI GCATC 1 cut(s) 115
SgeI CNNG 8 cut(s) 113, 122, 146, 194, 227, 233, 270, 282
SmiMI CAYNNNNRTG 3 cut(s) 47, 111, 219
Sse9I AATT 1 cut(s) 71
TasI AATT 1 cut(s) 71
TatI WGTACW 3 cut(s) 160, 217, 260
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseI GCWGC 1 cut(s) 273
TspGWI ACGGA 1 cut(s) 137
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.