RchiOBHm_Chr3g0480641
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0029927
Physical Location & Seq
Reverse (-)
26467876 .. 26472879
5004 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44565

Sequence Viewer

Length: 381 bp
ATGGATGGTAAAGGGGGACCAACCAATTCTTCCACACCGTTACCATGGGCAGCTAGGTTAAAAATTGCTCAGGGGAGCGCAAGAGGTTTGACGTACATACACGAACACAGCCCTAGAAAGTATGTTCCCGGCAACATTAAATCGACAAAAATCCTTCTCAATGAGGACCTCCAGCCTTACGTATCTGGTTTCGGATTGGCACGTCTTATCTTGGGGTCCTCAAAGTTTCTTCTTCAGCTTCCAGGAAAAAGAGCTCCAGCCAAACCAACGCAACCTCTTGTTTTACTGTTTCAACTCACTCAACCATTTACTTGGCACCTGAGGCTCGAATTTCTGGCAGCAAGTTTACTCAGAAATGTGATGTGTACTGTTTTGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

126

Amino Acids

13.83

Weight (kDa)

10.4

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029927)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0480641
rosa_samantha Rh3AG236700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 315
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 2 cut(s) 95, 367
AgsI TTSAA 1 cut(s) 293
AjiI CACGTC 1 cut(s) 203
AjnI CCWGG 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 13, 45
AluBI AGCT 3 cut(s) 53, 238, 254
AluI AGCT 3 cut(s) 53, 238, 254
Alw21I GWGCWC 1 cut(s) 256
ApeKI GCWGC 2 cut(s) 50, 338
ApoI RAATTY 1 cut(s) 329
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 3 cut(s) 17, 166, 216
AsuC2I CCSGG 1 cut(s) 129
AvaII GGWCC 3 cut(s) 17, 166, 216
AxyI CCTNAGG 1 cut(s) 320
BanI GGYRCC 1 cut(s) 315
BanII GRGCYC 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 2 cut(s) 62, 350
BciT130I CCWGG 1 cut(s) 243
BcnI CCSGG 1 cut(s) 129
BfaI CTAG 2 cut(s) 54, 114
BisI GCNGC 2 cut(s) 51, 339
BlsI GCNGC 2 cut(s) 52, 340
Bme1390I CCNGG 2 cut(s) 129, 243
Bme18I GGWCC 3 cut(s) 17, 166, 216
BmgBI CACGTC 1 cut(s) 203
BmgT120I GGNCC 3 cut(s) 17, 166, 216
BmiI GGNNCC 3 cut(s) 18, 217, 317
BmrFI CCNGG 2 cut(s) 129, 243
BpmI CTGGAG 2 cut(s) 155, 240
Bpu10I CCTNAGC 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 44
Bse21I CCTNAGG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 3 cut(s) 83, 311, 364
BseXI GCAGC 2 cut(s) 62, 350
BshNI GGYRCC 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 256
Bsp19I CCATGG 1 cut(s) 44
BspCNI CTCAG 3 cut(s) 82, 312, 363
BspLI GGNNCC 3 cut(s) 18, 217, 317
BspT107I GGYRCC 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 3 cut(s) 39, 288, 370
BstBAI YACGTR 1 cut(s) 181
BstDEI CTNAG 3 cut(s) 69, 320, 350
BstDSI CCRYGG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 80
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 2 cut(s) 127, 241
BstSNI TACGTA 1 cut(s) 181
BstV1I GCAGC 2 cut(s) 62, 350
BstXI CCANNNNNNTGG 1 cut(s) 312
Bsu36I CCTNAGG 1 cut(s) 320
BtgI CCRYGG 1 cut(s) 44
BtrI CACGTC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 10
CfoI GCGC 1 cut(s) 80
Cfr13I GGNCC 3 cut(s) 17, 166, 216
Csp6I GTAC 2 cut(s) 94, 366
CviAII CATG 1 cut(s) 45
CviJI RGCY 7 cut(s) 53, 111, 175, 238, 254, 260, 325
CviKI_1 RGCY 7 cut(s) 53, 111, 175, 238, 254, 260, 325
CviQI GTAC 2 cut(s) 94, 366
DdeI CTNAG 3 cut(s) 69, 320, 350
Ecl136II GAGCTC 1 cut(s) 254
Eco105I TACGTA 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 256
Eco47I GGWCC 3 cut(s) 17, 166, 216
Eco53kI GAGCTC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 218
Eco81I CCTNAGG 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 254
EcoO109I RGGNCCY 2 cut(s) 166, 216
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 1 cut(s) 48
FaiI YATR 3 cut(s) 46, 98, 123
FaqI GGGAC 1 cut(s) 30
FatI CATG 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 51, 339
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 2 cut(s) 51, 339
FspBI CTAG 2 cut(s) 54, 114
GlaI GCGC 1 cut(s) 79
GluI GCNGC 2 cut(s) 51, 339
GsuI CTGGAG 2 cut(s) 155, 240
HapII CCGG 1 cut(s) 129
HhaI GCGC 1 cut(s) 80
Hin1II CATG 1 cut(s) 48
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HpaII CCGG 1 cut(s) 129
Hpy166II GTNNAC 2 cut(s) 347, 366
Hpy188I TCNGA 2 cut(s) 194, 353
Hpy8I GTNNAC 2 cut(s) 347, 366
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 3 cut(s) 39, 288, 370
HpyCH4IV ACGT 3 cut(s) 92, 180, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 3 cut(s) 69, 320, 350
HpySE526I ACGT 3 cut(s) 92, 180, 202
Hsp92II CATG 1 cut(s) 48
HspAI GCGC 1 cut(s) 78
LmnI GCTCC 2 cut(s) 75, 259
LpnPI CCDG 9 cut(s) 56, 142, 171, 185, 228, 255, 270, 320, 332
Lsp1109I GCAGC 2 cut(s) 62, 350
MaeI CTAG 2 cut(s) 54, 114
MaeII ACGT 3 cut(s) 92, 180, 202
MaeIII GTNAC 1 cut(s) 39
MboII GAAGA 3 cut(s) 21, 221, 224
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 3 cut(s) 25, 63, 329
MnlI CCTC 6 cut(s) 77, 157, 179, 229, 285, 315
MseI TTAA 2 cut(s) 59, 138
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 2 cut(s) 129, 243
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 322
NciI CCSGG 1 cut(s) 129
NcoI CCATGG 1 cut(s) 44
NlaIII CATG 1 cut(s) 48
NlaIV GGNNCC 3 cut(s) 18, 217, 317
PfoI TCCNGGA 1 cut(s) 241
PkrI GCNGC 2 cut(s) 52, 340
Ppu21I YACGTR 1 cut(s) 181
PpuMI RGGWCCY 2 cut(s) 166, 216
Psp124BI GAGCTC 1 cut(s) 256
Psp5II RGGWCCY 2 cut(s) 166, 216
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 3 cut(s) 18, 217, 317
PspPI GGNCC 3 cut(s) 17, 166, 216
PspPPI RGGWCCY 2 cut(s) 166, 216
RsaI GTAC 2 cut(s) 95, 367
RsaNI GTAC 2 cut(s) 94, 366
SacI GAGCTC 1 cut(s) 256
SaqAI TTAA 2 cut(s) 59, 138
SatI GCNGC 2 cut(s) 51, 339
Sau96I GGNCC 3 cut(s) 17, 166, 216
ScrFI CCNGG 2 cut(s) 129, 243
SduI GDGCHC 1 cut(s) 256
SinI GGWCC 3 cut(s) 17, 166, 216
SnaBI TACGTA 1 cut(s) 181
Sse9I AATT 3 cut(s) 25, 63, 329
SspMI CTAG 2 cut(s) 54, 114
SstI GAGCTC 1 cut(s) 256
StyD4I CCNGG 2 cut(s) 127, 241
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 3 cut(s) 39, 288, 370
TaiI ACGT 3 cut(s) 95, 183, 205
TaqI TCGA 2 cut(s) 143, 327
TasI AATT 3 cut(s) 25, 63, 329
TatI WGTACW 1 cut(s) 365
Tru1I TTAA 2 cut(s) 59, 138
Tru9I TTAA 2 cut(s) 59, 138
TseI GCWGC 2 cut(s) 50, 338
VpaK11BI GGWCC 3 cut(s) 17, 166, 216
XapI RAATTY 1 cut(s) 329
XspI CTAG 2 cut(s) 54, 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.