Rh3AG236700
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0029927
Physical Location & Seq
Reverse (-)
24516132 .. 24524612
8481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG236700.1

Sequence Viewer

Length: 525 bp
ATGGAGTCAATAGGTGGTGGGCTGGTGGGATTGCGGCTCTCTTTCGTGATTCCTCTGATTTACGTCTCCATGGTGTGGCAAAATATGTTTCTACCTCTTCTTCACTGCTTGCAGAAGCGCTGGCCTAGGGGCTCTACTCCATGCTCAAGATCTTTCTGGGGACCAACCAATTCTTCCACACCGTTACCATGGGCAGCTAGGTTAAAAATTGCTCAGGGGAGCGCAAGAGGTTTGACGTACATACACGAACACAGCCCTAGAAAGTATGTTCCCGGCAACATTAAATCGACAAAAATCCTTCTCAATGAGGACCTCCAGCCTTACGTATCTGGTTTCGGATTGGCACGTCTTATCTTGGGGTCCTCAAAGTTTCTTCTTCAGCTTCCAGGAAAAAGAGCTCCAGCCAAACCAACGCAACCTCTTGTTTTACTGTTTCAACTCACTCAACCATTTACTTGGCACCTGAGGCTCGAATTTCTGGCAGCAAGTTTACTCAGAAATGTGATGTGTACTGTTTTGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

174

Amino Acids

19.44

Weight (kDa)

10.61

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029927)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0480641
rosa_samantha Rh3AG236700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 459
AccB7I CCANNNNNTGG 1 cut(s) 75
AciI CCGC 1 cut(s) 34
AcsI RAATTY 1 cut(s) 473
AcuI CTGAAG 1 cut(s) 362
AfaI GTAC 2 cut(s) 239, 511
AfeI AGCGCT 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 1 cut(s) 437
AjiI CACGTC 1 cut(s) 347
AjnI CCWGG 1 cut(s) 385
AjuI GAANNNNNNNTTGG 2 cut(s) 157, 189
AluBI AGCT 3 cut(s) 197, 382, 398
AluI AGCT 3 cut(s) 197, 382, 398
Alw21I GWGCWC 1 cut(s) 400
Alw26I GTCTC 1 cut(s) 70
Aor51HI AGCGCT 1 cut(s) 119
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 2 cut(s) 194, 482
ApoI RAATTY 1 cut(s) 473
AspA2I CCTAGG 1 cut(s) 125
AspLEI GCGC 2 cut(s) 120, 224
AspS9I GGNCC 3 cut(s) 161, 310, 360
AsuC2I CCSGG 1 cut(s) 273
AvaII GGWCC 3 cut(s) 161, 310, 360
AvrII CCTAGG 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 464
BanI GGYRCC 1 cut(s) 459
BanII GRGCYC 2 cut(s) 134, 400
Bbv12I GWGCWC 1 cut(s) 400
BbvI GCAGC 2 cut(s) 206, 494
BciT130I CCWGG 1 cut(s) 387
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 3 cut(s) 126, 198, 258
BfoI RGCGCY 1 cut(s) 121
BglII AGATCT 1 cut(s) 149
BisI GCNGC 3 cut(s) 35, 195, 483
BlnI CCTAGG 1 cut(s) 125
BlsI GCNGC 3 cut(s) 36, 196, 484
Bme1390I CCNGG 2 cut(s) 273, 387
Bme18I GGWCC 3 cut(s) 161, 310, 360
BmgBI CACGTC 1 cut(s) 347
BmgT120I GGNCC 3 cut(s) 161, 310, 360
BmiI GGNNCC 3 cut(s) 162, 361, 461
BmrFI CCNGG 2 cut(s) 273, 387
BpmI CTGGAG 2 cut(s) 299, 384
Bpu10I CCTNAGC 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 273
BsaAI YACGTR 1 cut(s) 325
BsaJI CCNNGG 3 cut(s) 69, 125, 188
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse21I CCTNAGG 1 cut(s) 464
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 3 cut(s) 69, 125, 188
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 3 cut(s) 227, 455, 508
BseXI GCAGC 2 cut(s) 206, 494
BshFI GGCC 1 cut(s) 124
BshNI GGYRCC 1 cut(s) 459
BsiHKAI GWGCWC 1 cut(s) 400
BsiSI CCGG 1 cut(s) 273
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 70
BsmBI CGTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 174
BsnI GGCC 1 cut(s) 124
Bsp1286I GDGCHC 2 cut(s) 134, 400
Bsp143I GATC 1 cut(s) 149
Bsp19I CCATGG 2 cut(s) 69, 188
BspACI CCGC 1 cut(s) 34
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 3 cut(s) 226, 456, 507
BspLI GGNNCC 3 cut(s) 162, 361, 461
BspT107I GGYRCC 1 cut(s) 459
BssECI CCNNGG 3 cut(s) 69, 125, 188
BssMI GATC 1 cut(s) 149
BssT1I CCWWGG 3 cut(s) 69, 125, 188
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 3 cut(s) 183, 432, 514
Bst6I CTCTTC 1 cut(s) 102
BstBAI YACGTR 1 cut(s) 325
BstC8I GCNNGC 2 cut(s) 110, 122
BstDEI CTNAG 3 cut(s) 213, 464, 494
BstDSI CCRYGG 2 cut(s) 69, 188
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 2 cut(s) 120, 224
BstKTI GATC 1 cut(s) 152
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 466
BstNI CCWGG 1 cut(s) 387
BstSCI CCNGG 2 cut(s) 271, 385
BstSNI TACGTA 1 cut(s) 325
BstV1I GCAGC 2 cut(s) 206, 494
BstX2I RGATCY 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 456
BstYI RGATCY 1 cut(s) 149
Bsu36I CCTNAGG 1 cut(s) 464
BsuRI GGCC 1 cut(s) 124
BtgI CCRYGG 2 cut(s) 69, 188
BtrI CACGTC 1 cut(s) 347
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 110, 122
CfoI GCGC 2 cut(s) 120, 224
Cfr13I GGNCC 3 cut(s) 161, 310, 360
Csp6I GTAC 2 cut(s) 238, 510
CviAII CATG 3 cut(s) 70, 141, 189
CviQI GTAC 2 cut(s) 238, 510
DdeI CTNAG 3 cut(s) 213, 464, 494
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 398
Eco105I TACGTA 1 cut(s) 325
Eco130I CCWWGG 3 cut(s) 69, 125, 188
Eco24I GRGCYC 2 cut(s) 134, 400
Eco47I GGWCC 3 cut(s) 161, 310, 360
Eco47III AGCGCT 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 362
Eco81I CCTNAGG 1 cut(s) 464
EcoICRI GAGCTC 1 cut(s) 398
EcoO109I RGGNCCY 2 cut(s) 310, 360
EcoRII CCWGG 1 cut(s) 385
EcoT14I CCWWGG 3 cut(s) 69, 125, 188
EcoT38I GRGCYC 2 cut(s) 134, 400
ErhI CCWWGG 3 cut(s) 69, 125, 188
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 3 cut(s) 73, 144, 192
FaiI YATR 6 cut(s) 71, 86, 142, 190, 242, 267
FaqI GGGAC 1 cut(s) 174
FatI CATG 3 cut(s) 69, 140, 188
Fnu4HI GCNGC 3 cut(s) 35, 195, 483
FriOI GRGCYC 2 cut(s) 134, 400
Fsp4HI GCNGC 3 cut(s) 35, 195, 483
FspBI CTAG 3 cut(s) 126, 198, 258
GlaI GCGC 2 cut(s) 119, 223
GluI GCNGC 3 cut(s) 35, 195, 483
GsuI CTGGAG 2 cut(s) 299, 384
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 1 cut(s) 124
HapII CCGG 1 cut(s) 273
HhaI GCGC 2 cut(s) 120, 224
Hin1II CATG 3 cut(s) 73, 144, 192
Hin6I GCGC 2 cut(s) 118, 222
HinP1I GCGC 2 cut(s) 118, 222
HinfI GANTC 2 cut(s) 5, 49
HpaII CCGG 1 cut(s) 273
Hpy166II GTNNAC 2 cut(s) 491, 510
Hpy188I TCNGA 3 cut(s) 57, 338, 497
Hpy188III TCNNGA 2 cut(s) 46, 147
Hpy8I GTNNAC 2 cut(s) 491, 510
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 3 cut(s) 183, 432, 514
HpyCH4IV ACGT 4 cut(s) 63, 236, 324, 346
HpyCH4V TGCA 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 466
HpyF3I CTNAG 3 cut(s) 213, 464, 494
HpySE526I ACGT 4 cut(s) 63, 236, 324, 346
Hsp92II CATG 3 cut(s) 73, 144, 192
HspAI GCGC 2 cut(s) 118, 222
Kzo9I GATC 1 cut(s) 149
LmnI GCTCC 2 cut(s) 219, 403
Lsp1109I GCAGC 2 cut(s) 206, 494
MaeI CTAG 3 cut(s) 126, 198, 258
MaeII ACGT 4 cut(s) 63, 236, 324, 346
MaeIII GTNAC 1 cut(s) 183
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MboII GAAGA 5 cut(s) 89, 92, 165, 365, 368
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 2 cut(s) 134, 400
MluCI AATT 3 cut(s) 169, 207, 473
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 8 cut(s) 63, 105, 221, 301, 323, 373, 429, 459
MseI TTAA 2 cut(s) 203, 282
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 2 cut(s) 273, 387
MvaI CCWGG 1 cut(s) 387
MwoI GCNNNNNNNGC 1 cut(s) 466
NciI CCSGG 1 cut(s) 273
NcoI CCATGG 2 cut(s) 69, 188
NdeII GATC 1 cut(s) 149
NlaIII CATG 3 cut(s) 73, 144, 192
NlaIV GGNNCC 3 cut(s) 162, 361, 461
PfeI GAWTC 1 cut(s) 49
PflMI CCANNNNNTGG 1 cut(s) 75
PfoI TCCNGGA 1 cut(s) 385
PkrI GCNGC 3 cut(s) 36, 196, 484
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 325
PpuMI RGGWCCY 2 cut(s) 310, 360
Psp124BI GAGCTC 1 cut(s) 400
Psp5II RGGWCCY 2 cut(s) 310, 360
Psp6I CCWGG 1 cut(s) 385
PspGI CCWGG 1 cut(s) 385
PspN4I GGNNCC 3 cut(s) 162, 361, 461
PspPI GGNCC 3 cut(s) 161, 310, 360
PspPPI RGGWCCY 2 cut(s) 310, 360
PsuI RGATCY 1 cut(s) 149
RsaI GTAC 2 cut(s) 239, 511
RsaNI GTAC 2 cut(s) 238, 510
SacI GAGCTC 1 cut(s) 400
SaqAI TTAA 2 cut(s) 203, 282
SatI GCNGC 3 cut(s) 35, 195, 483
Sau3AI GATC 1 cut(s) 149
Sau96I GGNCC 3 cut(s) 161, 310, 360
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 273, 387
SduI GDGCHC 2 cut(s) 134, 400
SinI GGWCC 3 cut(s) 161, 310, 360
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
SnaBI TACGTA 1 cut(s) 325
Sse9I AATT 3 cut(s) 169, 207, 473
SsiI CCGC 1 cut(s) 34
SspMI CTAG 3 cut(s) 126, 198, 258
SstI GAGCTC 1 cut(s) 400
StyD4I CCNGG 2 cut(s) 271, 385
StyI CCWWGG 3 cut(s) 69, 125, 188
TaaI ACNGT 3 cut(s) 183, 432, 514
TaiI ACGT 4 cut(s) 66, 239, 327, 349
TaqI TCGA 2 cut(s) 287, 471
TasI AATT 3 cut(s) 169, 207, 473
TatI WGTACW 1 cut(s) 509
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 2 cut(s) 203, 282
Tru9I TTAA 2 cut(s) 203, 282
TscAI CASTG 1 cut(s) 110
TseI GCWGC 2 cut(s) 194, 482
TspRI CASTG 1 cut(s) 110
Van91I CCANNNNNTGG 1 cut(s) 75
VpaK11BI GGWCC 3 cut(s) 161, 310, 360
XapI RAATTY 1 cut(s) 473
XmaJI CCTAGG 1 cut(s) 125
XspI CTAG 3 cut(s) 126, 198, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.