RchiOBHm_Chr3g0483251

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0024922
Physical Location & Seq
Reverse (-)
29458331 .. 29458981
651 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44800

Sequence Viewer

Length: 378 bp
ATGATACAGAGAGACGATGGGTCTTGGAACGCCATGATCAAGGCATATTCCCAAAGTGGGTTTCCTGAGGATGCTTTGGTTTCGTTTTTGGATATGAATAGGGCCGGTTTTTTGTCGACTGAGATTACTTTGGCTAGTGTTCTTGGCTCATGTGCTACGGTTTTGGAGTTTTGGGTTACAAGATACATGGAGTTGGGATTAAAATGGGTTTTGAAGATGATGAGGTTGTTTCGAGCTCCCTTATTGATATGTTATGTTAAATGCGGGAAGCTAGAACATGCTCATGCAATTTTTGATCAGCCCCATTCAAAAAACTTGATTTCTTGGACTTCAATTTTTTCTGGGTATGCAATGAGTGGACAAAGTGTTTTTTTTTGA

Protein Analysis

125

Amino Acids

14.17

Weight (kDa)

7.74

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 8 - 37 2.8e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024922)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0483251
rosa_multiflora Rmu_sc0034048.1_g000002
rosa_samantha Rh3DG283000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 116
AciI CCGC 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 3 cut(s) 214, 309, 333
AhdI GACNNNNNGTC 1 cut(s) 19
AjuI GAANNNNNNNTTGG 2 cut(s) 45, 77
AluBI AGCT 2 cut(s) 236, 271
AluI AGCT 2 cut(s) 236, 271
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 1 cut(s) 6
AoxI GGCC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 102
AxyI CCTNAGG 1 cut(s) 66
BanII GRGCYC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 238
BccI CCATC 1 cut(s) 11
BclI TGATCA 2 cut(s) 36, 295
BcoDI GTCTC 1 cut(s) 6
BfaI CTAG 2 cut(s) 135, 272
BmeRI GACNNNNNGTC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 102
BmsI GCATC 1 cut(s) 61
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse118I RCCGGY 1 cut(s) 104
Bse21I CCTNAGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 357
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMI GCAATG 1 cut(s) 357
BseMII CTCAG 2 cut(s) 57, 111
BshFI GGCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 6
BsmBI CGTCTC 1 cut(s) 6
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 2 cut(s) 36, 295
BspACI CCGC 1 cut(s) 264
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 2 cut(s) 58, 112
BsrDI GCAATG 1 cut(s) 357
BsrFI RCCGGY 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 104
BssMI GATC 2 cut(s) 36, 295
Bst4CI ACNGT 1 cut(s) 160
BstDEI CTNAG 2 cut(s) 66, 120
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 2 cut(s) 39, 298
BstMAI GTCTC 1 cut(s) 6
BstMBI GATC 2 cut(s) 36, 295
BstNSI RCATGY 1 cut(s) 281
Bsu36I CCTNAGG 1 cut(s) 66
BsuRI GGCC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 102
CviAII CATG 5 cut(s) 34, 150, 187, 278, 284
CviJI RGCY 6 cut(s) 104, 134, 147, 236, 271, 301
CviKI_1 RGCY 6 cut(s) 104, 134, 147, 236, 271, 301
DdeI CTNAG 2 cut(s) 66, 120
DpnI GATC 2 cut(s) 38, 297
DpnII GATC 2 cut(s) 36, 295
DriI GACNNNNNGTC 1 cut(s) 19
Eam1105I GACNNNNNGTC 1 cut(s) 19
Ecl136II GAGCTC 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 238
Eco53kI GAGCTC 1 cut(s) 236
Eco81I CCTNAGG 1 cut(s) 66
EcoICRI GAGCTC 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 238
Esp3I CGTCTC 1 cut(s) 6
FaeI CATG 5 cut(s) 37, 153, 190, 281, 287
FatI CATG 5 cut(s) 33, 149, 186, 277, 283
FauI CCCGC 1 cut(s) 257
FbaI TGATCA 2 cut(s) 36, 295
FblI GTMKAC 1 cut(s) 116
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 1 cut(s) 238
FspBI CTAG 2 cut(s) 135, 272
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 105
Hin1II CATG 5 cut(s) 37, 153, 190, 281, 287
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HpaII CCGG 1 cut(s) 105
Hpy166II GTNNAC 2 cut(s) 117, 359
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 2 cut(s) 117, 359
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 287, 350
HpyF3I CTNAG 2 cut(s) 66, 120
Hsp92II CATG 5 cut(s) 37, 153, 190, 281, 287
Ksp22I TGATCA 2 cut(s) 36, 295
Kzo9I GATC 2 cut(s) 36, 295
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 3 cut(s) 78, 118, 327
LweI GCATC 1 cut(s) 61
MaeI CTAG 2 cut(s) 135, 272
MaeIII GTNAC 1 cut(s) 175
MalI GATC 2 cut(s) 38, 297
MboI GATC 2 cut(s) 36, 295
MboII GAAGA 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 2 cut(s) 288, 333
MnlI CCTC 2 cut(s) 61, 216
MseI TTAA 2 cut(s) 200, 258
MslI CAYNNNNRTG 1 cut(s) 282
MspI CCGG 1 cut(s) 105
NdeII GATC 2 cut(s) 36, 295
NlaIII CATG 5 cut(s) 37, 153, 190, 281, 287
NspI RCATGY 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 102
RseI CAYNNNNRTG 1 cut(s) 282
SacI GAGCTC 1 cut(s) 238
SalI GTCGAC 1 cut(s) 115
SaqAI TTAA 2 cut(s) 200, 258
Sau3AI GATC 2 cut(s) 36, 295
Sau96I GGNCC 1 cut(s) 102
SduI GDGCHC 1 cut(s) 238
SetI ASST 3 cut(s) 227, 238, 273
SfaNI GCATC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 282
Sse9I AATT 2 cut(s) 288, 333
SsiI CCGC 1 cut(s) 264
SspMI CTAG 2 cut(s) 135, 272
SstI GAGCTC 1 cut(s) 238
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 116, 232
TasI AATT 2 cut(s) 288, 333
Tru1I TTAA 2 cut(s) 200, 258
Tru9I TTAA 2 cut(s) 200, 258
TspDTI ATGAA 1 cut(s) 110
XceI RCATGY 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 116
XspI CTAG 2 cut(s) 135, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.