Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034048.1

Orthogroup ID

OG0024922

Physical Location & Seq

Genomic Coordinates Forward (+)

909 .. 1445

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034048.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atggccgggtttcctgaggatgctttggtttcgtttttggatatgaatagggctggttttttgtcgactgagattactttcgctagtgttcttggctcgtgtgttgcggttttggagttttgggttacaaggcaggttcatggtcttgttattgagtatggctttggcgggaatgctgtgatgatgttttttcggatgcttgtggcgggtgtaaggccgttgaattataccctctctaatgctcttgctgcctgttccagtgcttttgcacttgtggaggggaagcggatacatggagttgggattaaaatgggttttgaagatgatgaggttgtttcgagctcccttattgatatgtatgttaaatgcgggaagctagaacatgctcatttcgataagccctattcaaaaaacttgatttcttggacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

143

Amino Acids

15.67

Weight (kDa)

5.74

Isoelectric Point (pI)

30.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024922)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0483251
rosa_multiflora	Rmu_sc0034048.1_g000002
rosa_samantha	Rh3DG283000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	124
AccI	GTMKAC	1 cut(s)	65
AciI	CCGC	5 cut(s)	107, 168, 206, 286, 369
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	3 cut(s)	223, 320, 408
AluBI	AGCT	2 cut(s)	342, 376
AluI	AGCT	2 cut(s)	342, 376
Alw21I	GWGCWC	1 cut(s)	344
AoxI	GGCC	2 cut(s)	3, 215
ApeKI	GCWGC	1 cut(s)	248
AsuC2I	CCSGG	1 cut(s)	7
AxyI	CCTNAGG	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	344
BauI	CACGAG	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	235
BceAI	ACGGC	1 cut(s)	202
BciVI	GTATCC	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	7
BfaI	CTAG	2 cut(s)	84, 377
BfuAI	ACCTGC	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	282
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	7
BmsI	GCATC	2 cut(s)	10, 186
BpuMI	CCSGG	1 cut(s)	7
Bse1I	ACTGG	1 cut(s)	258
Bse21I	CCTNAGG	1 cut(s)	15
BseGI	GGATG	2 cut(s)	25, 201
BseMII	CTCAG	2 cut(s)	6, 60
BseNI	ACTGG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	235
BshFI	GGCC	2 cut(s)	5, 217
BsiHKAI	GWGCWC	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	6
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	5, 217
Bsp1286I	GDGCHC	1 cut(s)	344
BspACI	CCGC	5 cut(s)	107, 168, 206, 286, 369
BspANI	GGCC	2 cut(s)	5, 217
BspCNI	CTCAG	2 cut(s)	7, 61
BspMI	ACCTGC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	258
BssSI	CACGAG	1 cut(s)	97
Bst2BI	CACGAG	1 cut(s)	97
BstDEI	CTNAG	2 cut(s)	15, 69
BstF5I	GGATG	2 cut(s)	25, 201
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	5
BstV1I	GCAGC	1 cut(s)	235
Bsu36I	CCTNAGG	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	5, 217
BtsCI	GGATG	2 cut(s)	25, 201
BtsIMutI	CAGTG	1 cut(s)	265
BveI	ACCTGC	1 cut(s)	124
CviAII	CATG	3 cut(s)	140, 293, 383
CviJI	RGCY	8 cut(s)	5, 53, 96, 162, 217, 342, 376, 400
CviKI_1	RGCY	8 cut(s)	5, 53, 96, 162, 217, 342, 376, 400
DdeI	CTNAG	2 cut(s)	15, 69
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	344
Eco53kI	GAGCTC	1 cut(s)	342
Eco81I	CCTNAGG	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	344
FaeI	CATG	3 cut(s)	143, 296, 386
FaiI	YATR	8 cut(s)	44, 141, 159, 228, 294, 356, 360, 384
FatI	CATG	3 cut(s)	139, 292, 382
FauI	CCCGC	3 cut(s)	161, 199, 362
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	2 cut(s)	32, 208
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	2 cut(s)	84, 377
GluI	GCNGC	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	5, 217
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	3 cut(s)	143, 296, 386
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	2 cut(s)	15, 69
Hsp92II	CATG	3 cut(s)	143, 296, 386
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	6 cut(s)	19, 27, 39, 119, 265, 271
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	2 cut(s)	10, 186
MaeI	CTAG	2 cut(s)	84, 377
MaeIII	GTNAC	1 cut(s)	124
MboII	GAAGA	1 cut(s)	332
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	1 cut(s)	223
MnlI	CCTC	4 cut(s)	10, 242, 271, 322
MseI	TTAA	2 cut(s)	306, 363
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	7
Mva1269I	GAATGC	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	7
NlaIII	CATG	3 cut(s)	143, 296, 386
NspI	RCATGY	1 cut(s)	386
PctI	GAATGC	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	250
Psp124BI	GAGCTC	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	344
SalI	GTCGAC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	306, 363
SatI	GCNGC	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	344
SetI	ASST	4 cut(s)	138, 333, 344, 378
SfaNI	GCATC	2 cut(s)	10, 186
Sse9I	AATT	1 cut(s)	223
SsiI	CCGC	5 cut(s)	107, 168, 206, 286, 369
SspMI	CTAG	2 cut(s)	84, 377
SstI	GAGCTC	1 cut(s)	344
StyD4I	CCNGG	1 cut(s)	5
TaqI	TCGA	3 cut(s)	65, 338, 393
TasI	AATT	1 cut(s)	223
Tru1I	TTAA	2 cut(s)	306, 363
Tru9I	TTAA	2 cut(s)	306, 363
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	59, 128
TspRI	CASTG	1 cut(s)	265
XceI	RCATGY	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	65
XspI	CTAG	2 cut(s)	84, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.